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Table 1 List of differentially expressed miRNAs common to both OpenArray analysis and miRNA-Seq.

From: Integrated analyses to reconstruct microRNA-mediated regulatory networks in mouse liver using high-throughput profiling

Category

miRNA

miRNA loci

miRNA-Seq

OpenArray

 

miR-429-3p

chr4:156053905-156053987:-

2.01

3.56E+00

 

miR-200a-3p

chr4:156054896-156054985:-

2.50

2.25E+00

 

miR-200b-3p

chr4:156055681-156055750:-

3.53

4.25E+00

 

miR-200c-3p

chr6:124718322-124718390:-

1.86

2.88E+00

 

miR-182-5p

chr6:30165918-30165992:-

2.12

2.41E+00

 

miR-326-3p

chr7:99552269-99552363:+

2.07

1.83E+00

 

miR-199a-5p

chr9:21496495-21496564:-

3.39

1.10E+01

 

miR-673-3p

chr12: 109571990-109572080:+

34.09

3.55E+04

 

miR-337-3p

chr12: 109585789-109585885:+

22.14

9.67E+00

 

miR-337-5p

chr12: 109585789-109585885:+

59.88

2.20E+01

 

miR-540-3p

chr12: 109586080-109586146:+

26.89

1.04E+04

 

miR-431-5p

chr12: 109590447-109590537:+

34.02

5.96E+05

 

miR-127-3p

chr12: 109592846-109592915:+

61.60

1.59E+01

 

miR-127-5p

chr12: 109592846-109592915:+

38.92

3.07E+01

 

miR-434-3p

chr12: 109594506-109594599:+

68.55

2.98E+01

 

miR-434-5p

chr12: 109594506-109594599:+

49.12

2.35E+01

 

miR-136-3p

chr12:109595327-109595388:+

55.82

1.29E+01

 

miR-136-5p

chr12:109595327-109595388:+

42.94

2.49E+00

 

miR-379-5p

chr12:109709060-109709125:+

46.48

1.74E+01

 

miR-379-3p

chr12:109709060-109709125:+

62.39

7.18E+00

 

miR-411-3p

chr12:109710175-109710256:+

64.08

1.16E+01

 

miR-411-5p

chr12:109710175-109710256:+

56.88

2.51E+01

Up-regulated

miR-299a-5p

chr12:109710638-109710700:+

34.89

6.81E+02

 

miR-329-3p

chr12:109713481-109713577:+

19.84

1.05E+04

 

miR-494-3p

chr12:109715318-109715402:+

16.36

1.35E+03

 

miR-1193-3p

chr12:109715671-109715791:+

33.38

1.07E+01

 

miR-543-3p

chr12:109717258-109717333:+

28.07

5.30E+00

 

miR-495-3p

chr12:109718754-109718816:+

31.35

2.03E+01

 

miR-376c-3p

chr12:109722718-109722803:+

43.62

1.85E+01

 

miR-376b-3p

chr12:109723458-109723539:+

64.47

4.21E+01

 

miR-376b-5p

chr12:109723458-109723539:+

56.26

2.81E+01

 

miR-376a-3p

chr12:109723781-109723848:+

12.12

2.07E+04

 

miR-300-3p

chr12:109724313-109724391:+

48.31

2.87E+03

 

miR-381-3p

chr12:109726822-109726896:+

59.30

2.33E+03

 

miR-382-5p

chr12:109733771-109733846:+

26.07

4.62E+00

 

miR-382-3p

chr12:109733771-109733846:+

16.26

4.37E+03

 

miR-134-5p

chr12:109734139-109734209:+

41.55

3.29E+01

 

miR-485-5p

chr12:109734902-109734974:+

10.71

1.18E+05

 

miR-485-3p

chr12:109734902-109734974:+

63.49

9.91E+01

 

miR-154-3p

chr12:109738433-109738498:+

63.36

8.38E+01

 

miR-154-5p

chr12:109738433-109738498:+

57.20

4.12E+03

 

miR-496a-3p

chr12:109739119-109739197:+

48.48

5.39E+03

 

miR-541-5p

chr12:109742409-109742498:+

48.98

4.90E+01

 

miR-409-5p

chr12:109743158-109743236:+

16.22

7.26E+03

 

miR-409-3p

chr12:109743158-109743236:+

58.62

2.91E+01

 

miR-369-3p

chr12:109743418-109743496:+

19.52

1.03E+04

 

miR-369-5p

chr12:109743418-109743496:+

7.92

2.19E+03

 

miR-410-3p

chr12:109743715-109743795:+

51.74

9.52E+00

Down-regulated

miR-455-3p

chr4:63256851-63256932:+

0.64

4.35E-01

 

miR-455-5p

chr4:63256851-63256932:+

0.66

3.85E-01

 

miR-31-3p

chr4:88910557-88910662:-

0.40

9.54E-02

 

miR-31-5p

chr4:88910557-88910662:-

0.25

8.27E-02

 

miR-93-5p

chr5:138165523-138165610:-

0.58

9.70E-04

 

miR-339-3p

chr5:139369650-139369745:-

0.57

2.59E-01

 

miR-335-5p

chr6:30741299-30741396:+

0.41

3.99E-01

 

miR-486b-5p

chr8: 23142573-23142662:-

0.50

3.09E-01

 

miR-144-3p

chr11:78073005-78073070:+

0.46

1.83E-01

 

miR-451a

chr11:78073170-78073241:+

0.35

7.81E-03

 

miR-345-5p

chr12:108836973-108837068:+

0.52

3.19E-01

 

miR-17-5p

chr14:115043671-115043754:+

0.55

2.16E-07

 

miR-19a-3p

chr14:115044000-115044081:+

0.35

4.21E-01

 

miR-484

chr16:14159626-14159692:+

0.59

6.05E-01

 

miR-802-5p

chr16:93369720-93369816:+

0.17

7.01E-02

 

miR-145a-5p

chr18:61647825-61647894:-

0.56

1.95E-01

 

miR-322-5p

chrX:53054255-53054349:-

0.61

4.79E-01

  1. There are 48 up-regulated and 17 down-regulated miRNAs in 2-month-old male Mir122a-/- (KO) and WT mice. The expression ratio between the mir-122-/- and WT (KO/WT) is shown.