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Table 5 The results of Krogan PPI data and biomedical literature PPI data.

From: Integrating experimental and literature protein-protein interaction data for protein complex prediction

 

COACH

CMC

ClusterONE

COAN

 

F

σF

F

σF

F

σF

F

σF

Krogan dataset

0.441

-

0.358

-

0.401

-

0.451

-

Krogan + random I

0.439

0.002

0.353

0.004

0.379

0.014

0.445

0.002

Krogan + random II

0.436

0.004

0.349

0.006

0.354

0.021

0.449

0.006

Krogan + random III

0.433

0.004

0.347

0.006

0.34

0.018

0.444

0.007

Krogan + Aimed

0.457

-

0.411

-

0.417

-

0.464

-

Krogan + BioInfer

0.453

-

0.366

-

0.405

-

0.458

-

Krogan + IEPA

0.444

-

0.398

-

0.393

-

0.453

-

Krogan + HPRD50

0.445

-

0.384

-

0.389

-

0.463

-

Krogan + LLL

0.454

-

0.393

-

0.404

-

0.453

-

  1. Krogan + random I, Krogan + random II, and Krogan + random III show the results of randomly adding 1000, 2000 and 3000 PPIs to the Krogan dataset, respectively. The highest F-score of each approach is shown in bold.
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BMC Genomics

ISSN: 1471-2164

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