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Table 5 Top 25 SNPs identified by ts-RF in Parkinson case-control data set.

From: Genome-wide association data classification and SNPs selection using two-stage quality-based Random Forests

Rank

SNP

Gene ID

Gene Symbol

p-value

1

rs7170952

64927

TTC23

2.1E-44

2

rs850084

101928208

LOC

3.6E-13

3

rs832241

5789

PTPRD

6.8E-28

4

rs1469593

647946

LINC00669

1.0E-34

5

rs9383311

9972

NUP153

1.5E-28

6

rs17023875

55591

VEZT

1.4E-32

7

rs9952724

9811

CTIF

3.7E-11

8

rs3087584

2043

EPHA4

1.6E-04

9

rs10053056

831

CAST

6.4E-05

10

rs6900852

135112

NCOA7

2.0E-08

11

rs3790577

10207

INADL

2.4E-25

12

rs722571

30000

TNPO2

1.6E-09

13

rs7924316

723961

INS-IGF2

1.1E-06

14

rs4956263

9811

CTIF

2.8E-06

15

rs12680546

165829

GPR156

1.3E-04

16

rs10518765

440279

UNC13C

1.5E-05

17

rs12185438

8715

NOL4

7.3E-05

18

rs12364577

440040

LOC440040

4.4E-10

19

rs2157787

463

ZFHX3

3.2E-03

20

rs17649

6692

SPINT1

1.0E-04

21

rs6429429

10000

AKT3

1.3E-03

22

rs2346771

3084

NRG1

1.0E-02

23

rs2666781

64215

DNAJC1

4.2E-04

24

rs2867301

55204

GOLPH3L

3.9E-03

25

rs11819434

282973

JAKMIP3

3.8E-02

  1. Rows in bold indicate useful genes associated with neurological disorders.