Figure 5
From: PNImodeler: web server for inferring protein-binding nucleotides from sequence data
Example of predicting protein binding sites in a double stranded DNA (PDB ID: 4EUW). Blue balls, green balls, red balls and yellow balls represent true positives (TP), false positives (FP), true negatives (TN), and false negatives (FN), respectively. Protein is colored in gray. Chain B of 4EUW and chain C of 4EUW are complementary DNA sequences with the same partner protein, and their binding sites were predicted independently by the prediction model.