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Table 2 Testing on independent datasets with different window sizes (WS) from 21 to 31.

From: PNImodeler: web server for inferring protein-binding nucleotides from sequence data

WS

 

DPI1

 

DPI2

 

SN (%)

SP (%)

ACC (%)

PPV (%)

NPV (%)

MCC

SN

(%)

SP

(%)

ACC (%)

PPV (%)

NPV (%)

MCC

21

73.39

64.29

68.59

64.79

73.00

0.377

66.41

73.89

70.63

66.22

74.05

0.403

23

73.02

64.09

68.31

64.55

72.63

0.372

66.55

74.00

70.75

66.36

74.16

0.405

25

72.15

64.48

68.11

64.53

72.11

0.366

66.76

74.16

70.94

66.57

74.32

0.409

27

73.17

64.61

68.65

64.93

72.89

0.378

67.39

74.10

71.18

66.74

74.67

0.415

29

73.39

64.81

68.86

65.12

73.11

0.382

67.39

74.27

71.28

66.88

74.71

0.416

31

73.17

64.94

68.82

65.14

72.99

0.381

67.61

74.27

71.37

66.95

74.84

0.418

  1. SN: sensitivity, SP: specificity, ACC: accuracy, PPV: positive predictive value, NPV: negative predictive value, MCC: Matthews correlation coefficient.
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BMC Genomics

ISSN: 1471-2164

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