Table 1 Comparison of the assemblies generated by different methods.
From: A pipeline for completing bacterial genomes using in silicoand wet lab approaches
Methods | Scaffold size (including 'N's) | # of 'N's | Total nt assembled | Coverage* | # of gaps | Max gap |
|---|---|---|---|---|---|---|
SOAP package | 1,822,593 | 14,240 | 1,808,353 | 97.7% | 28 | ~36 kb |
CLC package | 1,884,513 | 201,850 | 1,682,663 | 90.9% | 380 | ~21 kb |
This pipeline | 1,851,618 | 0 | 1,851,618 | 100% | 0 | 0 |