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Table 2 Annotations transferred by transitive relationship and related feature items and annotations integrated in the GPKB on which the transfer is based.

From: Detection of gene annotations and protein-protein interaction associated disorders through transitive relationships between integrated annotations

# of Distinct

Feature A

Items

Available

(Homo s.)

# of Distinct

Feature B

Items

Available

(Homo s.)

# of Distinct

Feature C

Items

Available

(Homo s.)

# of Distinct

Feature A

/ Feature B

Annotations

Available

(Homo s.)

# of Distinct

Feature B

/ Feature C

Annotations

Available

(Homo s.)

# of Distinct

Feature A

/ Feature C

Annotations

Available

(Homo s.)

# of Distinct

Feature A

/ Feature C

Annotations

Available

Transferred

(Homo s.)

% of Distinct

Feature A

/ Feature C

Annotations

Available

Transferred

(Homo s.)

Genes:

14,848,524 (20,492)

Proteins:

11,736,361

(20,130)

Pathways:

513

12,031,396

(29,536)

104,416

(32,991)

98,316

(29,860)

3,144

(795)

3.20 %

(2.66 %)

Genes:

14,848,524 (20,492)

Proteins:

11,736,361

(20,130)

Biological

Functions: 41,285

12,031,396

(29,536)

704,382

(92,043)

1,044,857

(134,506)

21,942

(478)

2.10 %

(0.35 %)

Genes:

14,848,524 (20,492)

Proteins:

11,736,361

(20,130)

Enzymes:

5,403

12,031,396

(29,536)

200,964

(3,155)

-

211,305

(3,194)

ALL

Genes:

14,848,524 (20,492)

Proteins:

11,736,361

(20,130)

Transcripts: 8,065,827

(106,509)

12,031,396

(29,536)

80,680

(31,463)

7,644,482

(80,964)

6,793

(1,262)

0.09 %

(1.56 %)

Genes:

14,848,524 (20,492)

Proteins:

11,736,361

(20,130)

DNA Sequences:

563,760

(18,712)

12,031,396

(29,536)

163,396

(79,251)

16,107,408

(128,167)

7,690

(1,039)

0.05 %

(0.81 %)

Proteins:

11,736,361

(20,130)

Genes:

14,848,524 (20,492)

Genetic Disorders:

7,853

12,031,396

(29,536)

12,013

(12,013)

-

15,344

(15,344)

ALL

PPIs

277,095

(63,488)

Genes:

14,848,524 (20,492)

Genetic Disorders:

7,853

50,863

(9,922)

12,013

(12,013)

-

1,027

(1,027)

ALL

  1. Percentages of annotations transferred are with respect to annotations of the same type available in the GPKB; ALL: only annotations transferred, no annotations available in the GPKB.