Algorithms | Detection ratio | Succeeded | Co-factors | Motif cluster |
|---|
MOST | 43% | 8 | 3.7 | Y |
MOST+ | 45% | 11 | 4.3 | Y |
DREME | 25% | 10 | 5.6 | N |
Trawler | 11% | 8 | 0.6 | N |
nestedMICA | 21% | 10 | 2.1 | N |
MEME | 5% | 10 | 0.9 | N |
WEEDER | 6% | 10 | 0.5 | N |
CisFinder | 76% | 10 | 3.6 | Y |
HOMER | 38% | 11 | 3.0 | Y |
- Columns 2-5: 2) Detection ratio: the number of clusters aligned to motifs in the database divided by the total cluster number found over 13 TFs; 3) Succeeded: numbers of major TFBSs ranked first in the results; 4) Co-factors: the average numbers of unique co-factors found in databases (e-value<0.05 given by TOMTOM) and 5) Motif cluster: whether a clustering step is used to merge results of a method.
