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Table 3 Co-factors found by MOST+

From: MOST+: A de novo motif finding approach combining genomic sequence and heterogeneous genome-wide signatures

TF

Co-factors uniquely found by MOST+

Co-factors both found by DREME and MOST+

Co-factors uniquely found by DREME

CTCF

E2F3a, Myf

 

Myc, GABPA, STAT

ESRRB

Myfa, Sp1a, Srf

Klf4a

STAT3, Oct4, Myc, Sox2

KLF4

FEVa, CREB, CTCFa, Egr1a

Esrrb, STAT3, sp1a, Sox2, Oct4

Oct4, Gata3,Myc, Zfp161a

Oct4

GABPAa, Zfxa, CTCFa, Stat3, sp1a

Sox2a, Esrrba, Klf4a

CREB/ATF

cMyc

CREBa, GABPAa, Klf4a, Sox2, YY1a

STAT3a

Egr1a

nMyc

Elf3a, GABPAa, Zfp161a,

CREB/ATFa

STAT3, Smad1, sfpid

SMAD1

Sp1a, Sox11a, REST, FEV,Spib

Sox2a, Oct4a, Klf4a,Esrrba

Zic3a, Zfp740a

E2F1

Sp1a, Myf, GABPAa

STAT3a, CREB/ATF

Myca, FOX

NANOG

 

Zic3a, Klf4a, Esrrba

Elf5a, Tead1

SOX2

Sox10a, CTCFa, Myfa, Runx1a

Oct4a, Klf4a, Esrrba

Zic3a, STAT3

STAT3

Zic3a, Jundm2, FEVa

Esrrba, Klf4a, Oct4, Sox2, sp1a

Myc, Irf4

TCFCP2L1

Sox4a, Zic3a, Myf

Klf4a, Esrrba, Sox2,Oct4, Sp1a

Egr1a, Foxa, Myc, Tead1, CREB/ATF, STAT3

ZFX

Myfa, Egr1a, sp1a

STAT3

Myca, Esrrb

  1. a Supported by CisFinder or HOMER
  2. Columns 2-4: Co-factors found by 2) MOST+ only; 3) both MOST+ and DREME; and 4) DREME only for each dataset. When more than one motifs in the database were aligned, only the one with lowest p-value was counted.