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Table 3 Two differentially expressed genes (Nat1, top table, and Brca2, bottom table) that are ONLY detected by XBSeq, showing the exonic, non-exonic, and predicted true signals (estimated by using Eq.3), from 3 biological replicates for each WT and MYC mouse tissue.

From: Differential expression analysis of RNA sequencing data by incorporating non-exonic mapped reads

 

Read counts of gene Nat1

  
 

WT (3 replicates)

MYC (3 replicates)

  
 

1

2

3

μ

σ

1

2

3

μ

σ

FC 1

p 2

Exonic

63

47

77

62.3

15.0

91

110

120

107.0

14.7

1.3

0.15

Non-exonic

20

20

28

22.7

4.6

23

14

34

23.7

10.0

  

Predicted

true signal

43

27

49

39.7

11.4

68

96

86

83.3

14.2

1.6

0.05

 

Read counts of gene Brca2

  
 

WT (3 replicates)

MYC (3 replicates)

  
 

1

2

3

μ

σ

1

2

3

μt

σ

FC 1

p 2

Exonic

213

88

165

155.3

63.1

132

191

188

170.3

33.2

0.9

0.57

Non-exonic

216

77

142

145.0

69.5

90

108

101

99.7

9.1

  

Predicted

true signal

0

11

23

11.3

11.5

42

83

87

70.7

24.9

4.3

0

  1. 1) FC denotes the fold-change of MYC vs WT, and 2) is the p-value from DESeq (for Exonic read only) and XBSeq (for predicted true signal).