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Table 4 GO IDs where eQTL effect size for Adjusted Haplotype Conditional Entropy outside of the 90% confidence interval from permutation.

From: Conditional entropy in variation-adjusted windows detects selection signatures associated with expression quantitative trait loci (eQTLs)

Gene Ontology

Mangravite 2012: βH|H ± σH|H

Montgomer y'10 Exon: βH|H ± σH|H

Montgomer y '10 Trspt: βH|H ± σH|H

Schadt 2007: βH|H ± σH|H

Stranger 2007: βH|H ± σH|H

Veyrieras 2008: βH|H ± σH|H

Zeller 2010: βH|H ± σH|H

Negative Effect Sizes

GO:0006367

-0.099 ± 0.055

0.186 ± 0.086

-0.402 ± 0.592

0.137 ± 0.255

-1.600 ± 1.200

-0.001 ± 0.172

-0.048 ± 0.060

GO:0006396

-0.112 ± 0.041

-0.066 ± 0.065

-0.207 ± 0.109

-0.0001 ± 0.134

-0.160 ± 0.069

-0.049 ± 0.074

-0.050 ± 0.035

GO:0008544

no genes

-0.013 ± 0.125

no genes

-1.200 ± 0.933

no genes

-0.043 ± 0.126

0.032 ± 0.043

GO:0042742

-0.373 ± 0.105

-0.140 ± 0.111

-0.006 ± 0.249

-0.055 ± 0.180

-0.107 ± 0.123

-0.068 ± 0.132

0.019 ± 0.056

Large Positive Effect Sizes

GO:0001501

0.128 ± 0.047

0.158 ± 0.075

0.290 ± 0.083

0.006 ± 0.127

0.196 ± 0.330

0.139 ± 0.094

0.039 ± 0.039

GO:0006869

1.144 ± 0.643

0.119 ± 0.069

-0.037 ± 0.011

-0.074 ± 0.124

0.455 ± 0.676

0.066 ± 0.100

0.018 ± 0.037

GO:0006936

0.480 ± 0.076

-0.124 ± 0.052

-0.052 ± 0.116

0.084 ± 0.109

0.629 ± 0.262

0.304 ± 0.082

0.010 ± 0.030

GO:0007186

0.657 ± 0.452

0.309 ± 0.209

0.090 ± 0.259

no genes

0.771 ± 0.319

-0.143 ± 0.231

-0.067 ± *0.108

GO:0009653

0.010 ± 0.033

0.040 ± 0.061

0.414 ± 0.194

0.084 ± 0.100

0.322 ± 0.097

0.060 ± 0.044

0.037 ± 0.035

GO:0016567

0.185 ± 0.042

0.040 ± 0.071

-0.031 ± 0.0112

-0.322 ± 0.239

0.297 ± 0.059

0.113 ± 0.047

0.038 ± 0.040

GO:0018108

0.277 ± 0.049

0.027 ± 0.086

0.048 ± 0.094

0.031 ± 0.128

0.465 ± 0.119

0.175 ± 0.078

0.026 ± 0.026

GO:0051056

0.185 ± 0.044

0.030 ± 0.055

-0.006 ± q0.173

-0.136 ± 0.169

0.218 ± 0.103

0.333 ± 0.111

-0.033 ± 0.039

  1. Each row corresponds to GO ID, and each cell gives the logistic-scale effect size (β) and standard error (σ), for the Adjusted Haplotype Conditional Entropy (H|H) for eQTLs in genes within that GO category from a conditional logistic regression under Model 6. A bold cell indicates a term that is contributing to membership in the corresponding group; a red italicized cell indicates a term that is pointing in the opposite direction.