From: An improved probability mapping approach to assess genome mosaicism
ID | Functional Assignment | B&A | A&T | Comments | Compositional bias |
---|---|---|---|---|---|
008 | thymidylate kinase | weak | strong | - | - |
020 | seryl-tRNA synthetase | strong | strong | - | - |
054 | valyl-tRNA synthetase | none | strong | - | Strong |
062 | excision nuclease chain A | none | strong | - | Strong |
072 | chromosome segregation SMC protein | strong | None | Cyanobacteria, Rickettsia and Aquifex group within Archaea | Strong |
076 | hypothetical protein | weak | strong | Halobacterium groups within Bacteria | Strong |
080 | prolyl-tRNA synthetase | none | strong | Archaeal type homologs are found in some bacteria | - |
100 | hypothetical protein | - | - | Uninterpretable: no resemblance with assumed organismal phylogeny | - |
105 | DNA gyrase, subunit B | none | strong | Archaea do not form a group | - |
106 | arginyl-tRNA synthetase | strong | weak | - | Strong |
107 | DNA gyrase, subunit A | none | weak | Both Thermotoga and Aquifex group with Archaea | - |
110 | cysteinyl-tRNA synthetase | strong | strong | Both Thermotoga and Aquifex group within Archaea | - |
113 | hypothetical protein | weak | none | Both Thermotoga and Aquifex group within Archaea | Strong |
121 | chorismate synthase | weak | none | - | - |
122 | 3-phosphoshikimate-1-carboxyvinyltransferase | none | strong | - | - |
134 | histidinol dehydrogenase | weak | weak | Putative paralogs | - |
144 | 50S ribosomal protein L2 | none | strong | - | - |
145 | 30S ribosomal protein S19 | weak | strong | - | - |