Table 5 Association of Interspersed Repetitive Elements with Selected STR Types.
From: STRP Screening Sets for the human genome at 5 cM density
| Â | Number of STRPs Associated with Indicated Repeats (Fraction STRPs) | ||||||
|---|---|---|---|---|---|---|---|
Repeat | Total STRPs | AAAT | AAGG | AAT | AATG | AGAT | Other |
ALU | 189 (0.24) | 31 (0.89) | 9 (0.24) | 64 (0.39) | 2 (0.20) | 63 (0.13) | 20 (0.38) |
L1 | 96 (0.12) | 2 (0.06) | 5 (0.13) | 42 (0.26) | 0 (0.00) | 40 (0.08) | 7 (0.13) |
LTR | 119 (0.15) | 4 (0.11) | 3 (0.08) | 14 (0.09) | 0 (0.00) | 97 (0.20) | 1 (0.02) |
L2 | 16 (0.02) | 1 (0.03) | 1 (0.03) | 4 (0.02) | 4 (0.40) | 4 (0.01) | 2 (0.04) |
MER | 27 (0.03) | 0 (0.00) | 0 (0.00) | 5 (0.03) | 0 (0.00) | 20 (0.04) | 2 (0.04) |
MIR | 22 (0.03) | 1 (0.03) | 0 (0.00) | 8 (0.05) | 0 (0.00) | 8 (0.02) | 5 (0.10) |
Other | 6 (0.01) | 0 (0.00) | 0 (0.00) | 2 (0.01) | 0 (0.00) | 3 (0.01) | 1 (0.02) |
Not Associated | 352 (0.45) | 3 (0.09) | 23 (0.61) | 44 (0.27) | 5 (0.50) | 259 (0.54) | 18 (0.35) |
TOTAL TESTED | 781 | 35 | 38 | 163 | 10 | 483 | 52 |