Assessment of clusters of transcription factor binding sites in relationship to human promoter, CpG islands and gene expression

Table 2 CGI-related PWMs in descending order of r _IC.P= Y. The columns are: rank number, accession number, Identifier in TRANSFAC, r _PC.I(=X), r _IC.P(=Y), cluster score and threshold.

Rank	ACCESSION	ID	X	Y	S	T
1	M00332	WHN_B	0.09	0.43	158.4	1.9
2	M00736	E2F1DP1_01	0.06	0.39	151.8	2.6
3	M00739	E2F4DP2_01	0.09	0.29	91.4	0.9
4	M00737	E2F1DP2_01	0.06	0.27	81.9	0.9
5	M00108	NRF2_01	0.09	0.25	72.6	0.9
6	M00055	NMYC_01	0.05	0.25	34.6	0.9
7	M00235	AHRARNT_01	0.02	0.23	26.8	0.9
8	M00740	E2F1DP1RB_01	0.04	0.23	48.1	0.9
9	M00652	NRF1_Q6	0.05	0.22	105.3	0.9
10	M00466	HIF1_Q5	0.01	0.22	19.7	0.9
11	M00341	GABP_B	0.1	0.19	46.6	0.9
12	M00738	E2F4DP1_01	0.02	0.19	28.6	0.9
13	M00538	HTF_01	0	0.16	9.7	0.8
14	M00694	E4F1_Q6	0.03	0.16	23.6	0.9
15	M00743	CETS168_Q6	0.13	0.14	47.1	1
16	M00650	MTF1_Q4	0.04	0.14	22.6	0.9
17	M00243	EGR1_01	0.07	0.12	32.4	0.9
18	M00251	XBP1_01	0.01	0.12	7.8	0.9
19	M00691	ATF1_Q6	0.07	0.12	17.3	0.9
20	M00236	ARNT_01	0.02	0.11	6.5	1
21	M00143	PAX5_01	0.09	0.11	25.7	0.8
22	M00273	R_01	0.06	0.11	23.8	0.8
23	M00244	NGFIC_01	0.06	0.1	23	0.9
24	M00280	RFX1_01	0.06	0.1	11.1	0.9
25	M00121	USF_01	0.03	0.1	7.6	1
26	M00287	NFY_01	0.04	0.1	21.3	1.9
27	M00039	CREB_01	0.04	0.09	23.2	1
28	M00309	ACAAT_B	0.04	0.09	6.8	0.9
29	M00651	NFMUE1_Q6	0.03	0.09	13	1.8
30	M00017	ATF_01	0.06	0.08	19.2	1
31	M00481	AR_01	0.05	0.08	7.5	0.8
32	M00041	CREBP1CJUN_01	0.04	0.08	20.4	1
33	M00040	CREBP1_01	0.03	0.08	4.7	0.9
34	M00114	TAXCREB_01	0.02	0.06	7.3	0.9
35	M00279	MIF1_01	0.02	0.06	10.9	1.8
36	M00246	EGR2_01	0.04	0.06	9.7	0.9
37	M00085	ZID_01	0.05	0.06	8	0.8

ISSN: 1471-2164