BMC Genomics

Table 4 The gene list sorted by DCC score. The genes, in which clusters of TFBS are found on promoters using CpG-related/independent PWMs, and tissue specificity, have been previously identified. HK denotes housekeeping. Tissue specific genes can be selected independent of CpG islands (start_p) using DCC score.

From: Assessment of clusters of transcription factor binding sites in relationship to human promoter, CpG islands and gene expression

1	NM006272	0.43	brain	0
2	NM007341	0.4	muscle	0
3	NM002592	0.37	brain	0.86
4	NM001819	0.27	brain	0.68
5	NM004414	0.23	kidney	0.89
6	NM002999	0.19	kidney	0.73
7	NM003195	0.16	brain	0.73
8	NM002591	0.14	liver	0
9	NM000454	0.11	HK.liver	0.87
10	NM003312	0.1	liver	0.72
11	NM004339	0.09	brain	0.9
12	NM020708	0.08	brain	0.64
13	NM006870	0.05	HK	0.7
14	NM003277	0.04	lung	0.74
15	NM005194	0.04	brain	0.86
16	NM003610	0.01	brain	0.76
17	NM000355	-0.03	kidney	0
18	NM002430	-0.03	muscle	0.75
19	NM006767	-0.03	brain	0.74
20	NM005137	-0.03	muscle	0.76
21	NM003279	-0.05	muscle	0
22	NM004535	-0.05	brain	0
23	NM007019	-0.05	HK	0.72
24	NM013236	-0.07	HK	0.69
25	NM004175	-0.07	brain	0.72
26	NM001958	-0.07	muscle	0
27	NM001338	-0.13	vulva	0.84
28	NM002676	-0.14	HK	0.63
29	NM003098	-0.16	muscle	0.71
30	NM002854	-0.17	brain	0
31	NM002305	-0.23	HK	0
32	NM005080	-0.25	HK	0.84
33	NM001024	-0.25	HK	0.76
34	NM021974	-0.26	HK	0.63
35	NM014876	-0.3	HK	0.95
36	NM001098	-0.34	muscle	0.65
37	NM000071	-0.37	liver	0.8
38	NM006198	-0.37	brain	0
39	NM001675	-0.39	HK.muscle	0.8
40	NM005423	-0.68	brain	0

Back to article page

ISSN: 1471-2164

Contact us

Submission enquiries: bmcgenomics@biomedcentral.com
General enquiries: ORSupport@springernature.com