A comparative analysis of data generated using two different target preparation methods for hybridization to high-density oligonucleotide microarrays

Table 2 Number of differentially expressed genes detected by each protocol as a function of the minimum fold change and the posterior probability of exceeding it

Fold Change	Posterior Probability	IVT	dIVT	Both*
1.5	0.99	430	311	116
	0.95	1411	1122	513
	0.90	2206	1737	852
	0.85	2799	2234	1144
2	0.99	222	150	59
	0.95	694	542	256
	0.90	1073	883	428
	0.85	1375	1145	551
4	0.99	76	50	19
	0.95	207	155	90
	0.90	298	249	142
	0.85	375	314	179
8	0.99	33	21	6
	0.95	90	69	44
	0.90	129	97	65
	0.85	152	121	79

ISSN: 1471-2164