Table 2 Description of acronyms: Description and Pfam/SMART accession numbers (if available) of acronyms used throughout the text and in Table S1 are given. Column "conserved" refers to classification in conserved ZF-families (ZF-fam) and/or non-finger domains (NFD).
Acronym | Description | Pfam | SMART | conserved |
|---|---|---|---|---|
ANK | Ankyrin repeat | PF00023 | SM00248 | NFD |
C3H | C3H1 zinc finger | PF00642 | SM00356 | NFD |
CHROMO | CHRomatin Organisation MOdifier | PF00385 | SM00298 | NFD domain |
DNAJ | Dnaj molecular chaperone domain | PF00226 | SM00271 | NFD/ZF-fam |
DUF537 | Plant family of unknown function | PF04396 | - | NFD |
DUF627 | Plant family of unknown function | PF04781 | - | NFD |
DUF629 | Plant family of unknown function | PF04780 | - | NFD |
E7 | E7cadherine binding protein family | - | - | ZF-fam |
EXO3 | Exonuclease domain | PF00929 | SM00479 | NFD |
FZFnew | New ZFP family FZF | - | - | ZF-fam |
G-patch | G-patch domain | PF01585 | SM00443 | NFD |
HLH | Helix-loop-helix domain | PF00010 | SM00353 | NFD |
IPPT | IPP transferase family | PF01715 | - | NFD/ZF-fam |
JmjC | Jumonji domain, C-terminal part | PF02373 | SM00558 | NFD |
JmjN | Jumonji domain, N-terminal part | PF02375 | SM00545 | NFD |
KIN17 | KIN17 family | - | - | ZF-fam |
KOW | Kyprides, Ouzounis, Woese motif | PF00467 | SM00739 | NFD |
MBD | Methyl-CpG binding domain | PF01429 | SM00391 | NFD |
OTU | OTU-like cysteine protease | PF02338 | - | NFD |
PHD | PHD zinc finger | PF00628 | SM00249 | NFD |
PreSet | N-terminal to some SET domains | - | SM00468 | NFD |
PRMT3 | Ribosomal protein L11 methyl-transferase (PrmA)family | PF06325 | - | NFD/ZF-fam |
PUG | Domain in protein kinases | - | SM00580 | NFD |
RING | zf-C3HC4 or RING finger | PF00097 | SM00184 | NFD |
RRM | RNA recognition motif | PF00076 | SM00360 | NFD |
SAP61 | Splicosome associated protein 61/PRP9 family | - | - | ZF-fam |
SAP62 | Splicosome associated protein 62/PRP11 family | - | - | ZF-fam |
SAS | MOZ/SAS family | PF01853 | - | NFD/ZF-fam |
SE | Serrate family | - | - | ZF-fam |
SET | SET domain | PF00856 | SM00317 | NFD |
TF3A | Transcription factor IIIA family | - | - | ZF-fam |
U1-ZF | U1-like zinc finger | PF06220 | SM00451 | NFD |
UBA | UBA/TS-N domain (ubiquitin associated domain) | PF00627 | SM00165 | NFD |
UBX | UBX domain | PF00789 | SM00166 | NFD |
UPF0023 | Uncharacterized protein family | PF01172 | - | NFD |
VEF | VRN2-EMF2-FIS2 family | - | - | ZF-fam |
YY1 | Ying Yang 1 family | - | - | ZF-fam |
ZF-AN1 | AN1-like zinc finger | PF01428 | SM00154 | NFD |
ZP207SF | ZFP207 family | - | - | ZF-fam |