Combined analysis of expression data and transcription factor binding sites in the yeast genome

Table 2 Haploid-specific Genes that Do Not Contain a 1-α 2 Target Sites

ORF	Gene	Expression p-val^a	Binding p-val^b	Combined p-val	a1-α 2 ChIP^c
YIL117C	PRM5	0.0011	0.3690	0.0004	-
YLR159W		0.0015	0.4050	0.0006	-
YBR051W		0.0022	0.4390	0.0010	-
YLR080W	EMP46	0.0024	0.6757	0.0016	-
YIR039C	YPS6	0.0025	0.7843	0.0020	-
YCL014W	BUD3	0.0027	0.3475	0.0009	-
YPL189W	GUP2	0.0030	0.3708	0.0011	-
YJL077C	ICS3	0.0032	0.9540	0.0030	-
YML042W	CAT2	0.0033	0.7564	0.0025	-
YHR004C	NEM1	0.0035	0.6396	0.0022	+
YFR046C	CNN1	0.0036	0.5712	0.0020	-
YDR220C		0.0038	0.5919	0.0022	-
YPL025C		0.0041	0.6844	0.0028	-
YBR006W	UGA2	0.0043	0.7684	0.0033	-
YBR108W		0.0044	0.4390	0.0019	-
YFL034W		0.0046	0.3287	0.0015	-
YCL027W	FUS1	0.0047	0.7170	0.0034	-
YLR308W	CDA2	0.0049	0.3424	0.0017
YGR014W	MSB2	0.0050	0.6554	0.0033
YJL202C		0.0052	0.6416	0.0033

^a The ranking of haploid-specific gene expression determined by analysis of microarray data [11].
^b The ranking of potential a 1-α 2 target of haploid-specific genes.
^c A + indicates that the a 1-α 2 binds to the promoter by ChIP assay.

ISSN: 1471-2164