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Table 5c Performance of a dye combination in revealing modulated genes in B[a]P (30 μM) treated HepG2 cells using a cDNA array.

From: Application of four dyes in gene expression analyses by microarrays

 

Cy3-A488

A488-Cy3

Cy5-A594

A594-Cy5

Cy3-A488

35*

   

A488-Cy3

24

53

  

Cy5-A594

22

33

38

 

A594-Cy5

16

20

16

31

  1. * In bold the intersection of two gene lists indicating the modulated genes for a dye combination as percentage of all modulated genes (45 genes) found by analysis of all dye combinations combined. In italics the intersection of three gene lists indicating the modulated genes for two dye combinations as percentage of all modulated genes found for all dye combinations combined. The first dye was used for B[a]P treatment, the second for the control.