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Table 1 Accession numbers of cortactin and HS1 sequences

From: Comparative genome analysis of cortactin and HS1: the significance of the F-actin binding repeat domain

Gene

mRNA/EST

Protein

Genomic DNA

Chromosome

COMPLETE CORTACTIN AND HS1 SEQUENCES

Human (Homo sapiens, Hs)

    

   wt-cortactin

M98343a

AAA58455

AP000487

11q13b

   

AP000405

 

   SV1-cortactinc

BC008799

AAH08799

  
 

BC033889

AAH33889

  
 

NM_138565

NP_612632

  

   HS1d

X16663

CAA34651

NT_005612

3q13

 

BC016758

AAH16758

  

Chimpanzee (Pan troglodytes, Pt)

    

   wt-cortactin

  

AADA01305241e

9

   HS1

  

AADA01307895e

2

Mouse (Mus musculus, Mm)

    

   wt-cortactin

U03184

AAA19689

NT_00336 7F5

 

   SV1-cortactinf

BC011434

AAH11434

  
 

XM_144788

XP_144788

  
 

AK084249

BAC39148

  

   HS1

X84797

CAA59265

NW_006107

16B

 

BC007469

AAH07469

  
 

D42120

   

Rat (Rattus Norvegicus, Rn)

    

   wt-cortactin

  

NW_043405

1q41

   SV1-cortactin (isoform B)

AF054619

AAC08425

  

   SV2-cortactin (isoform C)

AF054618

AAC08424

  

   HS1

XM_221421

XP_221421

NW_042728

11q11

Chicken (Gallus gallus, Gg), wt-cortactin

M73705

AAA49031

AADN01110316g

5

   SV1-cortactin

BU109838g

   

   HS1

 

ENSGALG00000009778e,p

Un

Frog (Xenopus laevis, Xl), wt-cortactin

AB027611h

BAB79435

  

Frog (Xenopus tropicalis, Xt), wt-cortactin

  

scaffold_32906I

 

Zebrafish (Danio rerio, Dr), wt-cortactin

AF527956i

AAQ09010

  

   HS1

  

Finished_845o

4

Pufferfish (Takifugu rubripes, Tr), wt-cortactin

SINFRUG00000156355e

scaffold_853e

 

   HS1

SINFRUG00000124755e

scaffold_1329e

 

Pufferfish (Tetraodon nigroviridis, Tn), HS1

 

CAG04186

scaf14731

19

Fruit fly (Drosophila melanogaster, Dm)

NM_079702

NP_524426

AE003733

3R

 

AB009998

BAA34397

  
 

AB030177

BAB01490

  

Mosquito (Anopheles gambiae, Ag)

XM_315193

XP_315193

AAAB01008952i

2R

Sea urchin (Strongylocentrotus purpuratus, Sp)

NM_214617

NP_999782

scaffold_101e

 
 

AF064260i

AAD08655

  

Sponge (Suberites domuncula, Sd)

Y18027

CAC38778

  
 

Y18860

CAC80140

  

INCOMPLETE CORTACTIN AND HS1 SEQUENCES

Cattle (Bos taurus, Bt), SV1-cortactin

TC154749j,k

   
 

B222447k

   

Pig (Sus scrofa), wt-cortactin

TC48123j,l

   

Frog (Xenopus laevis, Xl) HS1

BC060434

AAH60434

  

Sea squirt (Ciona intestinalis, Ci)

TC32922j,m

 

scaffold_101i

 

White shrimp (Litopenaeus setiferus, Ls)

BE846976

   

White shrimp (Litopenaeus vannamei, Lv)

BE188605

   

Root knot worm (Meloidogyne incognita, Mi)

BE188583

   
 

BQ613692n

   
 

BQ625292n

   

Root knot worm (Meloidogyne chitwood, Mc)

CB856307

   
 

BQ613692

   

Root knot worm (Meloidogyne javanica, Mj)

BE578389

   
  1. aAll accession numbers except as noted below, may be found in the mRNA, EST, protein of genomic databases of NCBI [65].
  2. bChromosomal locations were obtained from UniGene, NCBI [65].
  3. cSV, splice variant. Accession numbers from EST's BE714795, BE717740, BE717751, BE717765, BE717811, E717819, BE717829, BE717871, BE274120, BE728099 [65].
  4. dHS1= Haematopoietic lineage cell-specific protein 1 = HCLS1= hematopoietic cell-specific Lyn substrate 1
  5. eAccession number was obtained from the EnsEMBL [67].
  6. fSV, splice variant. Accession numbers from EST's BE290787, BF321856, BG519413, BG174188, AA762862, AI099054, BF135250 [65].
  7. gAccession numbers were obtained from the U.S. Poultry Gene Mapping Project [75].
  8. hFrom 2500 bp untill 3578 bp of this mRNA is mRNA from another gene. Genomic DNA are pieces of sequences.
  9. iAccession numbers were obtained from the DNA Data Bank of Japan [70].
  10. jAccession numbers from EST's from the TIGR) [69].
  11. kHomologue to actin binding domain of human SV1-cortactin.
  12. lHomologue to C-terminal part of human cortactin incuding the SH3 domain.
  13. mHomologue to repeat 1 to 5 of the actin binding domain of human cortactin.
  14. nAccession numbers were obtained from the European Bioinformatics Institute. Homologue from 5' untills repeat 3 of the actin binding domain of human cortactin [73].
  15. oThe deduced cDNA and protein sequence from the genomic zebrafish Finished_845 sequence is more related to human HS1, while the zebrafish mRNA/protein sequence (AF527956, AAQ09010) showed more homology to human cortactin.
  16. pThe deduced cDNA and protein sequence from the genomic chicken ENSGALG00000009778 showed more homology to human HS1[67].
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BMC Genomics

ISSN: 1471-2164

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