Table 1 List of human MHC class I and extended class I (xI) region genes used against the zebrafish whole-genome assembly. Genes with the suffix "like" are either gene fragments and/or highly similar to their human counterparts. Genes not identified by sequence similarity searches are marked as not found (NF). The official gene nomenclature for zebrafish is shown in brackets.

name

accession

location

location

location

location

xI

HFE

NM_000410

NF

xI

HMGN4

NM_006353

NF

xI

PRSS16

NM_005865

NF

xI

POM121L2

NM_033482

NF

xI

GPX5

NM_001509

NF

xI

RFP

NM_006510

NF

xI

MAS1L

NM_052967

NF

xI

UBD

NM_006398

NF

xI

GABBR1

NM_021905

15 [gabbr1]

19 [gabbr1]

xI

MOG

NM_002433

NF

I

HLA*

19 [mhc1uea]

19 [mhc1uaa]

19 [mhc1ufa]

19 [mhc1uda]

s_1723 [mhc1ze]

1 [mhc1-like] (X3)

1 [zgc:64115]

I

HCG9

NM_005844

NF

I

PPP1R11

NM_021959

NF

I

RPP21

NM_024839

NF

I

GNL1

NM_005275

16 [gnl1]

I

PRR3

NM_025263

NF

I

ABCF1

NM_001090

19 [zgc:85667]

I

PPP1R10

NM_002714

19 [ppp1r10]

I

MRPS18B

NM_014046

19 [mrps18b]

I

C6orf134

NM_024909

19 [c6orf134]

I

C6orf136

NM_145029

19 [c6orf136]

I

DHX16

NM_003587

NA5816 [dhx16]

15 [dhx16]

I

NRM

NM_007243

NA1826 [nrm]

I

MDC1

NM_014641

NF

I

TUBB

NM_178014

20 [tubb5]

14 [tubb2]

23 [tubb2]

I

FLOT1

NM_005803

19 [flot1]

16 [flot1b]

I

IER3

NM_003897

NF

22 [ier5]

I

DDR1

NM_013994

16 [ddr1-like]

4 [ddr2]

I

GTF2H4

NM_001517

19 [zgc:77721]

I

VARS2L

NM_020442

19 [vars2-like]

I

DPCR1

NM_080870

NF

I

C6orf15

NM_014070

NF

I

CDSN

NM_001264

NF

I

PSORS1C1

NM_014068

NF

I

PSORS1C2

NM_014069

NF

I

C6orf18

NM_019052

NF

I

TCF19

NM_007109

1 [tcf19-like]

I

POU5FI

NM_002701

16 [pou5f1]

I

MICA

NM_000247

NF

I

HCP5

NM_006674

NF

I

MICB

NM_005931

NF