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Table 2 BLAT Results: TIGR Bt GI TCs vs. full-CDS bFLICs with identities > = 300

From: Characterization of 954 bovine full-CDS cDNA sequences

 

A

B

 

No bFLIC TC membership requirement

bFLIC required to be member in query TC

 

933 total bFLICs in all alignments

855 total bFLICs in all alignments

Fractional coverage of bFLICs by any single TC

Number of bFLICS

Average Contig Length

Number of bFLICS

Average Contig Length

> = .95

414

1470

401

1474

< .95

672

1782

456

1865

< .90

639

1797

409

1909

< .80

615

1810

360

1964

< .50

531

1846

264

2081

< .25

389

2139

163

2484

< .20

97

2430

29

2664

< .15

29

2781

8

2920

  1. In order to quantify how well the TCs cover the bFLICs, the number of bFLICs matched by TCs at different fractional coverage levels was determined. Fractional coverage of a bFLIC by a TC = number of identities in the BLAT match/bFLIC length.