Table 2 Rfam non-coding RNAs in CORG A + sign indicates that a sequence fragment from the corresponding species (hsa Homo sapiens, mmu Mus musculus, rno Rattus norvegicus, dre Danio rerio, tru Takifugu rubripes) is contained in the CORG CNB; ∅ indicates that a blast search for an orhologous sequence in the Ensemble database was unsuccessful; n.d. mean no descriptive Ensemble gene annotation. The CNBs containing mir-196a-2 are shifted compared to the known microRNA sequences, preventing the detection of the correct stem-loop structure. The B columns marks whether a candidate was identified by a blast search against the Rfam or microRNA Registry, the A column shows whether a hairpin structure was identified by RNAalifold.p_RNAz is the p-value for being an evolutionary conserved RNA secondary structure element returned by RNAz.

From: Comparative promoter region analysis powered by CORG