Table 2 The 100 genes predicted as neighbours of IS5 elements in the genome of MG1655 isolate 'A'. False significant genes are the genes without any neighbours (5 up- or down-stream neighbours) on this gene list; possible significant genes are the genes with one neighbor on the list; significant genes are the genes with at least 2 neighbours on the gene list. The names in bold are the known IS5 elements.
From: Genome-wide localization of mobile elements: experimental, statistical and biological considerations
False significant genes | lpxC, yi22_1, b0878, ompF, b1297, flip, ogrK, fruA, b2442, b2639, cpxR, araH |
|---|---|
Possible significant genes, strings of neighbours | 1. yi22_2, tra8_2 |
| Â | 2. b1578, rspB |
| Â | 3. yi22_4, yi21_4 |
| Â | 4. yi21_5, yi22_5 |
Significant genes, strings of neighbours | 1. b0255, tra8_1, ykfC, yi52_1, ykfD, yagD, insB_2 |
| Â | 2. b0546, b0547, b0548, b0550, b0551, yi52_2, b0554, b0555, b0556 |
| Â | 3. gltL, gltK, gltJ, ybeJ, yi52_3, b0658 |
| Â | 4. b1328, b1329, b1330, yi52_4, b1332, fnr |
| Â | 5. b1361, b1362, trkG, b1368, yi52_5, b1371, b1372, b1374 |
| Â | 6. motB, motA, flhC, flhD, yecG, otsA, otsB |
| Â | 7. nac, cobT, cobs, cobU, yi52_6, b1995, yi22_3 |
| Â | 8. b2028, gnd, yi52_7, yefJ, yefI, yefH, yefG |
| Â | 9. yejM, yejO, b2191, yi52_8, narP, ccmH |
| Â | 10. glcD, glcC, b2981, yi52_9, b2983, b2984, b2986 |
| Â | 11. yhcD, yhcE, yi52_10, b3219, yhcG |
| Â | 12. arsB, yhiS, yi52_11, slp, yhiF, yhiD |