Skip to main content

Table 1 The most abundantly represented ESTs in the S. moellendorffii cDNA library.

From: Functional analysis and comparative genomics of expressed sequence tags from the lycophyte Selaginella moellendorffii

 

Cluster

Number of ESTs

Top BLASTX hit in non-redundant protein database

   

Accession Number

Best Identity Description

E-value

1

SmoC-1_cn126

105

-

Novel

-

2

SmoC-1_cn125

46

-

Novel

-

3

SmoC-1_cn018

31

SP:P16031

Ribulose bisphosphate carboxylase small subunit) [Larix laricina]

8E-51

4

SmoC-1_cn121

25

SP:P04669

Ferredoxin, chloroplast precursor [Silene latifolia subsp. alba]

2E-26

5

SmoC-1_cn106

17

PIR:S16294

chlorophyll a/b-binding protein [Lycopersicon esculentum]

9E-99

6

SmoC-1_cn107

17

GB:AAM46780

latex plastidic aldolase-like protein [Hevea brasiliensis]

1E-164

7

SmoC-1_cn171

17

PIR:S31863

chlorophyll a/b-binding protein [Pinus sylvestris]

1E-106

8

SmoC-1_cn011

14

GB:AAC78107

photosystem-1 H subunit GOS5 [Oryza sativa]

8E-30

9

SmoC-1_cn233

13

SP:Q9SXW9

Plastocyanin, chloroplast precursor [Physcomitrella patens]

2E-37

10

SmoC-1_cn025

11

SP:P51118

glutamine synthetase cytosolic isoenzyme 1 [Vitis vinifera]

1E-152

11

SmoC-1_cn089

11

GB:AAG17036

S-adenosylmethionine synthetase [Pinus contorta]

7E-17

12

SmoC-1_cn195

11

SP:P11432

Early light-induced protein, chloroplast precursor (ELIP) [Pisum sativum]

1E-32

13

SmoC-1_cn023

9

SP:P82977

Subtilisin-chymotrypsin inhibitor [Triticum aestivum]

4E-11

14

SmoC-1_cn145

9

-

Novel

-

15

SmoC-1_cn179

9

SP:P30361

Cytochrome B6-F complex iron-sulfur subunit 1, chloroplast precursor [Nicotiana tabacum]

3E-74

16

SmoC-1_cn189

9

-

Novel

-

17

SmoC-1_cn006

8

GB:AAG59875

PSII subunit PsbW [Physcomitrella patens]

5E-13

18

SmoC-1_cn078

8

SP:O48560

Catalase 3 [Glycine max]

0

19

SmoC-1_cn211

8

SP:P23993

Photosystem I reaction center subunit XI, chloroplast precursor [Hordeum vulgare]

2E-55

20

SmoC-1_cn226

8

PDB:1EKJA

Carbonic Anhydrase [Pisum Sativum]

2E-63

21

SmoC-1_cn019

7

REF:NP_175963

photosystem I reaction center subunit V, chloroplast, [Arabidopsis thaliana]

2E-34

22

SmoC-1_cn108

7

PIR:T23512

hypothetical protein K08H10.2a [Caenorhabditis elegans]

1E-12

23

SmoC-1_cn215

7

GB:AAB88617

ubiquitin conjugating enzyme [Zea mays]

3E-82

24

SmoC-1_cn218

7

SP:P27494

Chlorophyll a-b binding protein 36, chloroplast precursor [Nicotiana tabacum]

1E-127

25

SmoC-1_cn013

6

PIR:T06471

core protein [Pisum sativum]

1E-20

26

SmoC-1_cn016

6

SP:Q9SLQ8

Oxygen-evolving enhancer protein 2, chloroplast precursor [Cucumis sativus]

1E-79

27

SmoC-1_cn033

6

GB:AAM97011

expressed protein [Arabidopsis thaliana]

6E-40

28

SmoC-1_cn136

6

GB:AAO49652

photosystem I-N subunit [Phaseolus vulgaris]

2E-37

29

SmoC-1_cn139

6

DBJ:BAC66946

chloroplastic iron superoxide dismutase [Barbula unguiculata]

3E-69

30

SmoC-1_cn180

6

EMB:CAB71293

chloroplast ferredoxin-NADP+ oxidoreductase precursor [Capsicum annuum]

1E-139

31

SmoC-1_cn208

6

SP:P54773

Photosystem II 22 kDa protein, chloroplast precursor [Lycopersicon esculentum]

5E-61

32

SmoC-1_cn250

6

-

Novel

-

  1. Non-redundant protein database includes all non-redundant GenBank CDS translations (GB)+ RefSeq Proteins (REF) +PDB + SwissProt (SP) + PIR + PRF. The identities of ESTs were putatively described by the top BLASTX hit (with lowest E-value) of the assembled EST contigs.
Back to article page

BMC Genomics

ISSN: 1471-2164

Contact us