Skip to main content

Table 2 The GO categorization of S. moellendorffii ESTs by biological process, molecular function, and cellular component.

From: Functional analysis and comparative genomics of expressed sequence tags from the lycophyte Selaginella moellendorffii

 

Gene Ontology term

Representation

Representation percentage

Biological process

Metabolism

312

74%

 

   Biosynthesis

64

15%

 

   Protein metabolism

57

14%

 

   Catabolism

22

5%

 

   Nucleic acid metabolism

20

5%

 

Cell growth and/or maintenance

53

13%

 

   Transport

44

10%

 

Response to stimulus and stress

19

5%

 

Photosynthesis

16

4%

 

Cell communication

15

4%

 

   Signal transduction

12

3%

 

Homeostasis

3

1%

 

Development

1

<1%

 

Cell death

1

<1%

Molecular function

Catalytic activity

132

36%

 

   Hydrolase activity

36

10%

 

   Transferase activity

25

7%

 

   Oxidoreductase activity

22

6%

 

   Kinase activity

12

3%

 

Binding

107

29%

 

   Nucleotide binding

65

18%

 

   Metal ion binding

20

5%

 

Transporter activity

64

18%

 

   Electron transporter activity

16

4%

 

   Carrier activity

12

3%

 

Structural molecule activity

40

11%

 

Translation regulator activity

10

3%

 

Signal transducer activity

4

1%

 

Chaperone activity

3

1%

 

Enzyme regulator activity

2

1%

 

Motor activity

1

<1%

 

Transcription regulator activity

1

<1%

Cellular component

Intracellular

135

75%

 

Membrane

45

25%

  1. Note that one gene product may be assigned to more than one GO terms, and one children term can fit into multiple parental categories. The representation means the number of non-redundant ESTs that can be mapped to a certain GO term. The representation percentage is based on the total number of GO mappings in each of the three major ontologies (biological process: 420, molecular function: 364, cellular component: 180).