Comprehensive comparative analysis of kinesins in photosynthetic eukaryotes

BMC Genomics

Table 4 P. trichocarpa kinesins and their structural features

Gene ID	Protein length	EST	Additional Domains	MD location	# of exons	Family
LG_VIII000260	429	Yes		I	10	UG
LG_II000635	921	No	CC, ARM	N	19	UG
LG_III0949	943	Yes	CC, ARM	N	20	UG
LG_II000522	970	No	CC, VWA	N	23	4
LG_VII000272	1036	Yes	CC	N	25	4
00020976^a	1290	Yes	CC	N	27	4
02310007^a	1280	No	CC	N	27	4
00160756^a	1031	No	CC	N	22	5
LG_I001798	1077	No	CC	N	22	5
00060694^a	1049	No	CC	N	23	5
LG_XVI0226	1031	Yes	TM	N	23	5
LG_XIII0655	944	Yes	CC	N	23	6
LG_XII000185	964	Yes	CC	N	13	7
scaffold 28000071	952	No	CC	N	14	7
LG_IX0409	939	Yes	CC	N	14	7
570109^b	909	Yes		N	17	7
LG_II000243	915	No		N	13	7
00020745^a	701	No		N	18	7
00160532^a	939	Yes	CC	N	23	7
LG_IV1283	1139	Yes	CC, ZF	N	25	7
LG_XIV000016	817	Yes	CC	N	19	7
LG_VI0681	1233	Yes	CC	N	27	7
00120495^a	784	Yes	CC	I	7	8
00151235^a	656	No	HHH	N	17	10
LG_VIII001511	853	No	CC	N	8	10
LG_X000373	964	Yes	CC	N	6	10
01300020^a	2921	No	CC	N	35	12
LG_IX000131	1300	No	CC	N	22	12
00012593^a	1196	No	CC, KR	N	15	12
LG_XIV000891	1278	Yes	CC, KR	N	17	12
LG_II001048	1281	No	CC, KR	N	17	12
00100152^a	814	Yes	CC	I	12	13
02100029^a	734	Yes		I	11	13
01330083^a	1022	No	CC, CH	I	19	14
00140705^a	957	Yes	CH	I	18	14
00120480^a	847	No	CC, CH	C	18	14
00150291^a	1020	No	CC, CH	C	19	14
LG_III001053	1133	No	CC, CH	I	21	14
1400045^b	1085	Yes	CH	I	16	14
00060440^a	1079	No	CH	I	17	14
00111158^a	1129	No	CC	I	16	14
LG_I003040	1212	No	CC	I	16	14
LG_II001016	1046	Yes	CC	I	19	14
00130189^a	778	No	CC	I	13	14
02560013^a	767	No	CC	I	12	14
07000001^a	498	Yes		I	10	14
LG_I000011	947	No	CC	N	11	14
LG_XIII000327	637	No	CC	I	10	14
LG_VII001210	1070	No	CC	N	21	14
LG_XI1218	1232	Yes	MyTH4, B4.1, CC	C	23	14
LG_XI0089	801	Yes	CC	C	16	14
LG_XI000300	752	Yes	CC	C	16	14

^aFor sequence acquisition at JGI, prefix with "eugene3." ^bFor sequence acquisition at JGI, prefix with "estext_fgeneshl_pg_vl.C_". Other possible kinesins with truncated motor domains: fgenesl_pg.C_LG_I000890, 0344001^b, 00700259^b and 08910001^b. MyTH4, Myosin tail homology 4; B4.1, Band 4.1; CC, Coiled-coil; KR, Kinesin-Related; VWA, Von Willebrand factor type A; CH, Calponin homology; ARM, Armadillo repeat; HHH, Helix-hairpin-helix; ZF, Zing finger; TM, Transmembrane domain; UG, Ungrouped; N, N-terminal; I, Internal; C, C-terminal.

ISSN: 1471-2164