Skip to main content

Table 1 Arabidopsis homolog count for the collections of gene indices.

From: A general pipeline for the development of anchor markers for comparative genomics in plants

 

Lotus japonicus (v. 3.0)

Medicago truncatula (v. 8.0)

Glycine max (v. 12.0)

Phaseolus vulgaris (v. 1.0)

Total number of gene indices

28,460

36,878

63,676

9,484

One Arabidopsis homolog

2,647 (278)

3,613 (869)

4,281

1,441

Two Arabidopsis homologs

1,613 (172)

2,231 (522)

3,349

1,009

Total (one and two Arabidopsis homologs)

4,062 (450)

5,644 (1,391)

7,630

2,450

  1. The species name is followed by the Release version (in parenthesis), and the number of gene indices (GI, combined EST clusters and singleton ESTs) are indicated for each species. Numbers of ESTs with one and two Arabdopsis homologs are listed. The numbers in parenthesis indicate the number of gene indices which show an intron when compared to the respective genomic sequence. L. japonicus GIs were compared to L. japonicus genomic sequences, whereas M. truncatula GIs were compared to M. truncatula genomic sequences.
Back to article page

BMC Genomics

ISSN: 1471-2164

Contact us