Complete plastid genome sequence of Daucus carota: Implications for biotechnology and phylogeny of angiosperms

BMC Genomics

Table 2 Repeats identified in the carrot plastid genome

Repeat #	Length	Location 1	Location 2
Direct
1*	70	ycf2 (IRa,b)	ycf2 (IRa,b)
2	42	ndhF:rpl32	ndhF:rpl32
3*	34	ycf2 (IRa,b)	ycf2 (IRa,b)
4*	42	ycf3 intron 2	rps12 _3end:orf80 (IRa,b)
5*	41	rps12 _3end:orf80 (IRa,b)	ndhA intron
6	34	ndhC:trnV-UAC	ndhC:trnV-UAC
7	33	trnS-GCU	trnS-UGA
8*	31	rrn5:trnR-ACG (IRa,b)	trnR-ACG:rrn5 (IRa,b)
9	30	trnG-GCC	trnG-GCC
10	30	psaB	psaA
11*	30	ycf2 (IRa,b)	ycf2 (IRa,b)
12*	30	ycf2 (IRa,b)	ycf2 (IRa,b)
Palindrome
13	30	psaJ:rpl33	psaJ:rpl33
14	30	ccsA:ndhD	ccsA:ndhD

Repeats at least 30 bp in size, with a sequence identity greater or equal than 90% are included.
Repeats marked with * are present in the IR and are therefore duplicated.
See Fig. 1 for location of repeats on the gene map.

ISSN: 1471-2164