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Table 1 Class A: Genes under Rel-dependent stringent control

From: Global gene expression during stringent response in Corynebacterium glutamicum in presence and absence of the rel gene encoding (p)ppGpp synthase

Locus taga

ratio

gene name

Annotation

COG classb

Genes under Rel-dependent, negative stringent control

cg0104

0.63

codA

creatinine deaminase

FR

cg0113

0.66

ureA

urease (γ subunit)

E

cg0229

0.33

gltB

glutamine 2-oxoglutarate aminotransferase large subunit

E

cg0291

0.62

 

3,4-dioxygenase beta subunit

Q

cg0419

0.59

 

glycosyltransferase

M

cg0599

0.58

rpsS

30S ribosomal protein S19

J

cg0637

0.55

betB

betaine aldehyde dehydrogenase oxireductase

C

cg0990

0.65

rpmG

50S ribosomal protein L33

J

cg1062

0.43

urtB

ABC-type urea transport system, permease component

E

cg1064

0.65

urtC

ABC-type urea transport system, permease component

E

cg1341

0.62

narI

respiratory nitrate reductase 2 (γ chain)

C

cg1342

0.64

narJ

nitrate reductase (Δ chain)

C

cg1606

0.62

pyrG

CTP synthetase

F

cg1607

0.66

 

NTP pyrophosphohydrolase

LR

cg1783

0.29

soxA'

sarcosine oxidase, N-terminal fragment

E

cg1784

0.50

ocd

ornithine cyclodeaminase

E

cg1785

0.33

amt

high-affinity ammonia permease

P

cg2260

0.27

glnK

Nitrogen regulatory protein PII

E

cg2280

0.39

gdh

NADP-specific glutamate dehydrogenase

E

cg2429

0.52

glnA

glutamine synthetase I

E

cg2942

0.48

 

Bacterial regulatory proteins, AsnC family

K

cg3308

0.65

rpsF

30S ribosomal protein S6

J

cg3370

0.58

 

NADH-dependent flavin oxidoreductase

C

Genes under Rel-dependent, positive stringent control

cg0414

1.66

wzz

cell surface polysaccharide biosynthesis protein

D

cg0552

1.60

menD

2-oxoglutarate decarboxylase

H

cg0834

1.58

 

Bacterial extracellular solute-binding protein

G

cg0924

3.24

 

ABC-type cobalamin/Fe3+-siderophores transport system

P

cg0926

1.87

 

ABC-type cobalamin/Fe3+-siderophores transport system

P

cg0928

1.64

 

ABC-type cobalamin/Fe3+-siderophores transport system

P

cg1873

1.69

tesB2

acyl-CoA thioesterase II

I

cg2102

1.79

sigB

RNA polymerase sigma factor

K

cg2114

1.59

lexA

LexA repressor transcriptional regulator

KT

cg2120

1.53

ptsF

PTS system, fructose/mannitol-specific enzyme II

G

cg2291

1.53

pyk

pyruvate kinase

G

cg2398

1.55

plsC

1-acyl-SN-glycerol-3-phosphate acetyltransferase

I

cg2403

2.61

qcrB

cytochrome B

C

cg2405

1.69

qcrC

cytochrome C1

C

cg2406

1.63

ctaE

cytochrome C, oxidase subunit 3

C

cg2459

1.53

ptpA

protein-tyrosine phosphatase

T

cg2645

1.82

clpP1

ATP-dependent Clp protease, proteolytic subunit ClpP1

OU

cg2963

2.09

clpC

ATP-dependent Clp protease ATPase subunit

O

cg3219

1.77

ldh

L-lactate dehydrogenase

C

  1. a Locus tag according to [50]
  2. b COG class according to [11]