Locus taga | ratio (WT) | ratio (Δrel) | gene name | Annotation | COG classb |
---|---|---|---|---|---|
Genes under Rel-independent, negative control | |||||
cg0464 | 0.56 | 0.40 | ctpA | copper-transporting ATPase | P |
cg0581 | 0.58 | 0.45 | rpsL | 30S ribosomal protein S12 | J |
cg0582 | 0.41 | 0.43 | rpsG | 30S ribosomal protein S7 | J |
cg0593 | 0.53 | 0.31 | rpsJ | 30S ribosomal protein S10 | J |
cg0594 | 0.52 | 0.44 | rplC | 50S ribosomal protein L3 | J |
cg0597 | 0.44 | 0.26 | rplW | 50S ribosomal protein L23 | J |
cg0600 | 0.54 | 0.31 | rplV | 50S ribosomal protein L22 | J |
cg0602 | 0.58 | 0.28 | rplP | 50S ribosomal protein L16 | J |
cg0604 | 0.46 | 0.47 | rpsQ | 30S ribosomal protein S17 | J |
cg0608 | 0.49 | 0.26 | rplN | 50S ribosomal protein L14 | J |
cg0609 | 0.59 | 0.45 | rplX | 50S ribosomal protein L24 | J |
cg0610 | 0.49 | 0.34 | rplE | 50S ribosomal protein L5 | J |
cg0628 | 0.42 | 0.34 | rpsH | 30S ribosomal protein S8 | J |
cg0629 | 0.53 | 0.48 | rplF | 50S ribosomal protein L6 | J |
cg0632 | 0.57 | 0.19 | rpmD | 50S ribosomal protein L30 | J |
cg0634 | 0.43 | 0.19 | rplO | 50S ribosomal protein L15 | J |
cg0651 | 0.56 | 0.31 | infA | translation initiation factor IF-1 | J |
cg0652 | 0.61 | 0.40 | rpsM | 30S ribosomal protein S13 | J |
cg0655 | 0.57 | 0.38 | rpoA | DNA-directed RNA polymerase (α subunit) | K |
cg0656 | 0.60 | 0.43 | rplQ | 50S ribosomal protein L17 | J |
cg0673 | 0.43 | 0.43 | rplM | 50S ribosomal protein L13 | J |
cg0756 | 0.54 | 0.48 | cstA | carbon starvation protein A | T |
cg0994 | 0.62 | 0.41 | rpmE | 50S ribosomal protein L31 | J |
cg1343 | 0.57 | 0.47 | narH | respiratory nitrate reductase oxireductase | C |
cg1344 | 0.60 | 0.41 | narG | nitrate reductase 2 (α subunit) | C |
cg1345 | 0.59 | 0.37 | narK | nitrate/nitrite transporter | P |
cg1565 | 0.66 | 0.62 | rplT | 50S ribosomal protein L20 | J |
cg1623 | 0.65 | 0.50 | divalent heavy-metal cations transporter | P | |
cg2167 | 0.46 | 0.56 | rpsO | 30S ribosomal protein S15 | J |
cg2253 | 0.53 | 0.49 | rpsP | 30S ribosomal protein S16 | J |
cg2573 | 0.41 | 0.30 | rpsT | 30S ribosomal protein S20 | J |
cg2595 | 0.65 | 0.64 | rplU | 50S ribosomal protein L21 | J |
cg3140 | 0.13 | 0.35 | tagA1 | DNA-3-methyladenine glycosylase I | L |
cg3141 | 0.22 | 0.46 | hmp | NO-detoxification flavohemoprotein | C |
cg3306 | 0.62 | 0.41 | rplI | 50S ribosomal protein L9 | J |
cg3307 | 0.44 | 0.42 | ssb | single-stranded DNA-binding protein | L |
Genes under Rel-independent, positive control | |||||
cg0310 | 3.12 | 4.89 | katA | catalase | P |
cg0812 | 1.66 | 2.13 | dtsR1 | acetyl/propionyl-CoA carboxylase (β chain) | I |
cg0898 | 3.33 | 2.75 | pyridoxine biosynthesis enzyme | H | |
cg0899 | 3.29 | 3.30 | glutamine amidotransferase (involved in pyridoxine biosynthesis) | H | |
cg1761 | 1.55 | 3.81 | nifS2 | cysteine desulfhydrase | E |
cg1763 | 1.72 | 6.59 | sufD | components of an uncharacterized iron-regulated ABC-type transporter | O |
cg1764 | 1.79 | 2.43 | sufB | component of an uncharacterized iron-regulated ABC-type transporter | O |
cg2409 | 2.31 | 1.61 | ctaC | cytochrome C oxidase chain II | C |
cg2644 | 1.83 | 2.93 | clpP2 | ATP-dependent Clp protease, proteolytic subunit | OU |
cg2732 | 1.68 | 2.41 | gntV | gluconokinase | G |
cg3114 | 1.55 | 2.90 | cysN | sulfate adenyltransferase subunit 1 | P |
cg3327 | 3.03 | 2.89 | dps | starvation-induced DNA protecting protein | P |