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Table 2 Class B: Genes under Rel-independent control

From: Global gene expression during stringent response in Corynebacterium glutamicum in presence and absence of the rel gene encoding (p)ppGpp synthase

Locus taga

ratio (WT)

ratio (Δrel)

gene name

Annotation

COG classb

Genes under Rel-independent, negative control

cg0464

0.56

0.40

ctpA

copper-transporting ATPase

P

cg0581

0.58

0.45

rpsL

30S ribosomal protein S12

J

cg0582

0.41

0.43

rpsG

30S ribosomal protein S7

J

cg0593

0.53

0.31

rpsJ

30S ribosomal protein S10

J

cg0594

0.52

0.44

rplC

50S ribosomal protein L3

J

cg0597

0.44

0.26

rplW

50S ribosomal protein L23

J

cg0600

0.54

0.31

rplV

50S ribosomal protein L22

J

cg0602

0.58

0.28

rplP

50S ribosomal protein L16

J

cg0604

0.46

0.47

rpsQ

30S ribosomal protein S17

J

cg0608

0.49

0.26

rplN

50S ribosomal protein L14

J

cg0609

0.59

0.45

rplX

50S ribosomal protein L24

J

cg0610

0.49

0.34

rplE

50S ribosomal protein L5

J

cg0628

0.42

0.34

rpsH

30S ribosomal protein S8

J

cg0629

0.53

0.48

rplF

50S ribosomal protein L6

J

cg0632

0.57

0.19

rpmD

50S ribosomal protein L30

J

cg0634

0.43

0.19

rplO

50S ribosomal protein L15

J

cg0651

0.56

0.31

infA

translation initiation factor IF-1

J

cg0652

0.61

0.40

rpsM

30S ribosomal protein S13

J

cg0655

0.57

0.38

rpoA

DNA-directed RNA polymerase (α subunit)

K

cg0656

0.60

0.43

rplQ

50S ribosomal protein L17

J

cg0673

0.43

0.43

rplM

50S ribosomal protein L13

J

cg0756

0.54

0.48

cstA

carbon starvation protein A

T

cg0994

0.62

0.41

rpmE

50S ribosomal protein L31

J

cg1343

0.57

0.47

narH

respiratory nitrate reductase oxireductase

C

cg1344

0.60

0.41

narG

nitrate reductase 2 (α subunit)

C

cg1345

0.59

0.37

narK

nitrate/nitrite transporter

P

cg1565

0.66

0.62

rplT

50S ribosomal protein L20

J

cg1623

0.65

0.50

 

divalent heavy-metal cations transporter

P

cg2167

0.46

0.56

rpsO

30S ribosomal protein S15

J

cg2253

0.53

0.49

rpsP

30S ribosomal protein S16

J

cg2573

0.41

0.30

rpsT

30S ribosomal protein S20

J

cg2595

0.65

0.64

rplU

50S ribosomal protein L21

J

cg3140

0.13

0.35

tagA1

DNA-3-methyladenine glycosylase I

L

cg3141

0.22

0.46

hmp

NO-detoxification flavohemoprotein

C

cg3306

0.62

0.41

rplI

50S ribosomal protein L9

J

cg3307

0.44

0.42

ssb

single-stranded DNA-binding protein

L

Genes under Rel-independent, positive control

cg0310

3.12

4.89

katA

catalase

P

cg0812

1.66

2.13

dtsR1

acetyl/propionyl-CoA carboxylase (β chain)

I

cg0898

3.33

2.75

 

pyridoxine biosynthesis enzyme

H

cg0899

3.29

3.30

 

glutamine amidotransferase (involved in pyridoxine biosynthesis)

H

cg1761

1.55

3.81

nifS2

cysteine desulfhydrase

E

cg1763

1.72

6.59

sufD

components of an uncharacterized iron-regulated ABC-type transporter

O

cg1764

1.79

2.43

sufB

component of an uncharacterized iron-regulated ABC-type transporter

O

cg2409

2.31

1.61

ctaC

cytochrome C oxidase chain II

C

cg2644

1.83

2.93

clpP2

ATP-dependent Clp protease, proteolytic subunit

OU

cg2732

1.68

2.41

gntV

gluconokinase

G

cg3114

1.55

2.90

cysN

sulfate adenyltransferase subunit 1

P

cg3327

3.03

2.89

dps

starvation-induced DNA protecting protein

P

  1. a L ocus tag according to [50]
  2. b COG class according to [11]