Table 3 Comparison of the main Gene Ontology categories among the gene lists
Gene Ontology: Level 3 | A2780 vs. CP70 + C30 + C200 | CP70 vs. C30 + C200 | Â |
|---|---|---|---|
|  | N° Genes (%) 1 | N° Genes (%) 2 | P |
Biological Process | Â | Â | Â |
   Cellular physiological process | 60 (81) | 39 (78) | 0.82 |
   Metabolism | 43 (58) | 29 (58) | 1 |
   Regulation of cellular process | 24 (32) | 15 (30) | 0.85 |
   Organismal physiological process | 23 (31) | 10 (20) | 0.22 |
   Regulation of physiological process | 22 (30) | 16 (32) | 0.84 |
   Cell communication | 20 (27) | 13 (26) | 1 |
   Localization | 18 (24) | 10 (20) | 0.66 |
   Response to stress | 13 (18) | 5 (10) | 0.30 |
   Response to biotic stimulus | 10 (14) | 5 (10) | 0.78 |
   Cell adhesion | 10 (14) | 3 (6) | 0.36 |
   Negative regulation of biological process | 9 (12) | 5 (10) | 0.78 |
   Response to external stimulus | 9 (12) | 3 (6) | 0.36 |
   Morphogenesis | 7 (9) | 3 (6) | 0.73 |
   Organ development | 6 (8) | 5 (10) | 0.75 |
Molecular Function | Â | Â | Â |
   Protein binding | 33 (40) | 24 (40) | 1 |
   Ion binding | 27 (33) | 15 (25) | 0.35 |
   Nucleic acid binding | 18 (22) | 12 (20) | 0.84 |
   Transferase activity | 14 (17) | 3 (5) | 0.04 (1)3 |
   Transcription factor activity | 8 (10) | 3 (5) | 0.36 |
   Receptor activity | 7 (9) | 11 (18) | 0.12 |
   Nucleotide binding | 7 (9) | 4 (7) | 0.76 |
   Hydrolase activity | 6 (7) | 9 (15) | 0.17 |
   Enzyme inhibitor activity | 6 (7) | 4 (7) | 1 |
   Receptor binding | 5 (6) | 5 (8) | 0.74 |