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Table 3 Most common repeat motifs identified from perfect and compound microsatellites in the three oomycetes analyzed.

From: Survey and analysis of microsatellites from transcript sequences in Phytophthora species: frequency, distribution, and potential as markers for the genus

P. infestans

P. sojae

P. ramorum

Motifa

Count

Percentage

Motif

Count

Percentage

Motif

Count

Percentage

AAG/CTT

258

15.54

AGC/CGT

1318

22.20

AGC/CGT

630

22.20

ACG/CTG

158

9.52

ACG/CTG

964

16.23

ACG/CTG

527

18.57

AGC/CGT

128

7.71

AAG/CTT

833

14.03

AAG/CTT

383

13.50

ACC/GGT

114

6.87

AGG/CCT

710

11.96

AGG/CCT

315

11.10

AGG/CCT

86

5.18

CCG/CGG

554

9.33

CCG/CGG

220

7.75

AAC/GTT

68

4.10

ACC/GGT

215

3.62

ACC/GGT

131

4.62

CCG/CGG

67

4.04

AAC/GTT

134

2.26

AAC/GTT

74

2.61

AC/GT

55

3.31

ACT/ATG

99

1.67

ACT/ATG

64

2.26

AG/CT

54

3.25

AGCG/CGCT

70

1.18

AGCG/CGCT

49

1.73

ACT/ATG

53

3.19

CG/CG

46

0.77

ACGC/CGTG

27

0.95

AAT/ATT

52

3.13

AGGC/CCGT

33

0.56

CG/CG

23

0.81

AAAC/GTTT

50

3.01

AGT/ATC

32

0.54

ACCG/CTGG

23

0.81

AAAT/ATTT

36

2.17

ACCG/CTGG

29

0.49

ACCACG/CTGGTG

15

0.53

AGT/ATC

25

1.51

AAGG/CCTT

28

0.47

AGT/ATC

14

0.49

AT/AT

23

1.39

ACGG/CCTG

28

0.47

AGCC/CGGT

14

0.49

  1. a The same constraints on minimum length cited for Table 1 were used.