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Table 4 The HQD count, mean and median phred scores and the HQD count

From: Analysis of the prostate cancer cell line LNCaP transcriptome using a sequencing-by-synthesis approach

HQD Type

Count

Mean

Median

Count > 400

Confirmable

86

342.4

163

16

Novel

1364

270.2

136

175

Other

29

233.2

122

4

  1. Counts collected for phred scores > 400 for each of the three HDQ classes: those confirmable by Ensembl, those that occur in positions with no known variations, and those that have incorrect mutations at positions with known variations ("Other").