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Table 1 Summary of the top 10 discrepant probesets whose (DRG,SN) expression ratios from the TwoRA deviate most from the OneRA.

From: Microarray analysis after RNA amplification can detect pronounced differences in gene expression using limma

ProbeSet ID (Gene Symbol)

Log 2 intensity

 

DRG

SN

SA

 

1R

2R

1R

2R

1R

2R

1425983_x_at (Hipk2)

0.87

0.89

8.20

0.73

7.79

0.70

1422277_at (Glra1)

2.35

2.40

9.65

2.46

9.87

2.46

1422009_at (Atp1b2)

2.98

2.56

12.73

5.50

12.57

4.49

1450177_at (Ngfr)

8.98

2.63

2.25

2.33

2.23

2.27

1425337_at (Slc12a5)

2.34

2.33

9.89

3.50

9.63

3.54

1425963_at (Cabp7)

1.94

1.98

7.88

2.07

7.80

2.03

1439083_at (Ahi1)

2.14

2.17

7.77

2.05

7.96

2.54

1429566_a_at (Hipk2)

1.62

1.55

11.01

5.60

10.78

5.71

1456637_at (Lrrtm2)

8.57

3.35

3.92

4.00

4.59

4.07

1423669_at (Col1a1)

11.06

5.86

2.76

2.81

2.74

2.74

  1. Listed are gene annotations (probeset ID and gene symbol) and log2 intensities from all biological versus protocol groups.
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BMC Genomics

ISSN: 1471-2164

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