Analysis of the dermatophyte Trichophyton rubrum expressed sequence tags

BMC Genomics

Table 2 The comparative results of ESTs to COGs and KOGs

	Functional Classification	Numbers in COG	Percents in COG	Numbers in KOG	Percents in KOG
	Information storage and processing
J	Translation, ribosomal structure and biogenesis	413	3.73%	408	3.68%
A	RNA processing and modification	21	0.19%	165	1.49%
K	Transcription	378	3.41%	131	1.18%
L	DNA replication, recombination and repair	213	1.92%	85	0.77%
B	chromatin structure and dynamics	32	0.29%	48	0.43%
	Cellular Processes and Signaling
D	Cell cycle control, cell division, chromosome partitioning	49	0.44%	86	0.78%
Y	Nuclear structure	3	0.03%	19	0.17%
V	Defense mechanisms	70	0.63%	17	0.15%
T	Signal transduction mechanisms	240	2.17%	209	1.89%
M	Cell wall/membrane/envelope biogenesis	152	1.37%	37	0.33%
N	Cell motility	64	0.58%	1	0.01%
Z	Cytoskeleton	45	0.41%	95	0.86%
W	Extracellular structures			4	0.04%
U	Intracellular trafficking, secretion, and vesicular transport	153	1.38%	244	2.20%
O	Posttranslational modification, protein turnover, chaperones	345	3.11%	424	3.82%
	Metabolism
C	Energy production and conversion	365	3.29%	315	2.84%
G	Carbohydrate transport and metabolism	409	3.69%	188	1.70%
E	Amino acid transport and metabolism	669	6.04%	343	3.09%
F	Nucleotide transport and metabolism	120	1.08%	110	0.99%
H	Coenzyme transport and metabolism	179	1.61%	118	1.06%
I	Lipid transport and metabolism	256	2.31%	219	1.98%
P	Inorganic ion transport and metabolism	402	3.63%	118	1.06%
Q	Secondary metabolites biosynthesis, transport and catabolism	188	1.70%	131	1.18%
	Poorly characterized
R	General function prediction only	844	7.61%	530	4.78%
S	Function unknown	219	1.98%	154	1.39%
	Total	11085

ISSN: 1471-2164