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Table 5 Genes that were significantly altered by at least 1.4-fold in response to BaP in both MCF-7 and HepG2 cells

From: Time- and concentration-dependent changes in gene expression induced by benzo(a)pyrene in two human cell lines, MCF-7 and HepG2

IMAGE Clone ID

Gene Symbol

Genbank Accession Number

Gene Title

Biological Process

Direction of expression alteration2

Pearson correlation with DNA adducts

     

MCF-7

HepG2

MCF-7

HepG2

1473304

AKR1C3

BQ939577

Aldo-keto reductase family 1, member C3 (3-alpha hydroxysteroid dehydrogenase, type II)

cell proliferation; prostaglandin metabolism

↑

↑

0.261

-0.065

810724

IER3

BM994398

Immediate early response 3

anti-apoptosis; cell growth and/or maintenance; embryogenesis and morphogenesis; morphogenesis

↑

↑

0.192

0.805 1

789376

TXNRD1

NM_003330

Thioredoxin reductase 1

electron transport; heavy metal sensitivity/resistance; signal transduction

↑

↑

0.849

0.253

768443

MGST1

AK123482

Microsomal glutathione S-transferase 1

prostaglandin metabolism

↑

↑

0.599

0.815

196992

AKR1C1

AK095239

Aldo-keto reductase family 1, member C1 (dihydrodiol dehydrogenase 1; 20-alpha (3-alpha)-hydroxysteroid dehydrogenase)

xenobiotic metabolism

↑

↑

0.383

0.078

214006

HIST1H2BG

NM_003518

Histone 1, H2bg

nucleosome assembly; regulation of transcription\, DNA-dependent

↓

↓↑

-0.780

-0.201

1842170

HIST1H4B

BX102654

Histone 1, H4b

nucleosome assembly; regulation of transcription\, DNA-dependent

↓

↓↑

-0.620

-0.173

129467

HIST1H2BJ

BF983642

Histone 1, H2bj

nucleosome assembly; regulation of transcription\, DNA-dependent

↓

↓↑

-0.709

-0.193

268891

HIST1H3D

BQ051491

Histone 1, H3d

embryogenesis and morphogenesis; nucleosome assembly

↓

↓↑

-0.896

-0.214

263087

CRY1

AK125915

Cryptochrome 1 (photolyase-like)

DNA repair; circadian rhythm; vision

↑

↑

0.805

0.215

140997

GDF15

BQ883534

Growth differentiation factor 15

signal transduction

↑

↑↓

0.940

0.716

273392

PIGF

BM558246

Phosphatidylinositol glycan, class F

GPI anchor biosynthesis

↑

↑

0.908

0.847

376772

RPS27L

BC047648

Ribosomal protein S27-like

cell proliferation; protein biosynthesis; signal transduction

↑

↑

0.944

0.380

1461138

HIST1H4C

CD048335

Histone 1, H4c

nucleosome assembly; regulation of transcription\, DNA-dependent

↓

↓↑

-0.706

-0.156

205819

CPM

NM_001874

Carboxypeptidase M

aromatic compound metabolism; morphogenesis; proteolysis and peptidolysis

↑

↑

0.930

0.768

1673711

GOLGA1

U51587

Golgi autoantigen, golgin subfamily a, 1

 

↑↓

↑

-0.194

-0.206

166273

CDKN1A

NM_078467

Cyclin-dependent kinase inhibitor 1A (p21, Cip1)

cell cycle arrest; induction of apoptosis by intracellular signals; negative regulation of cell proliferation; oncogenesis; regulation of CDK activity

↑

↑

0.947

0.713

324356

NQO1

NM_000903

NAD(P)H dehydrogenase, quinone 1

electron transport; nitric oxide biosynthesis; response to toxin; synaptic transmission\, cholinergic; xenobiotic metabolism

↑

↑

0.884

-0.023

49442

TXNRD1

NM_003330

Thioredoxin reductase 1

electron transport; heavy metal sensitivity/resistance; signal transduction

↑

↑

0.866

0.003

233273

STOM

NM_004099

Stomatin

 

↑

↑

0.925

0.886

25398

UNC84A

BX640866

Unc-84 homolog A (C. elegans)

 

↓

↓↑

-0.662

-0.097

731750

TAF6L

BC008785

TAF6-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor, 65kDa

chromatin remodeling; regulation of transcription from Pol II promoter; transcription initiation

↓

↓↑

-0.802

-0.210

381786

MAK

NM_005906

Male germ cell-associated kinase

protein amino acid phosphorylation; spermatogenesis

↑

↑

0.869

0.493

323511

C7ORF36

BX648555

Chromosome 7 open reading frame 36

 

↑

↑

0.917

0.567

760246

BLOC1S2

NM_001001342

Biogenesis of lysosome-related organelles complex-1, subunit 2

 

↑

↑

0.971

0.886

233279

SCD

NM_005063

Stearoyl-CoA desaturase (delta-9-desaturase)

fatty acid biosynthesis

↓

↓

-0.372

-0.482

24032

CRADD

AL832705

CASP2 and RIPK1 domain containing adaptor with death domain

induction of apoptosis via death domain receptors; signal transduction

↑

↓

0.359

0.420

  1. 1Values in bold are significant Pearson correlations (p < 0.05).
  2. 2Genes with arrows in both directions represent those that were down-regulated at one time-point and then up-regulated at another or vice versa.