Table 2 Genomic sequence annotation of the R1- and r1-contig.
ORF No. (1) | Manual Functional Annotation (2) | ORF No.(1) | Manual Functional Annotation (2) |
|---|---|---|---|
1 | Fragment of disease resistance protein | 27 | F-box protein-like |
2 | ZF-HD homeobox protein | 28 | MuDR transposase |
3 | Unknown protein | 29 | F-box protein |
4 | Ribosomal protein L34e | 30 | F-box protein |
5 | No apical meristem (NAM)-like | 31 | F-box protein |
6 | Hypothetical protein | 32 | F-box protein |
7 | Retrotransposon RNAse containing | 33 | F-box protein |
8 | Hypothetical protein | 34 | F-box associated domain containing protein |
9 | Retrotransposon | 35 | Hypothetical protein |
10 | F-box protein | 36 | Pseudogene (F-box protein-like) |
11 | Retrotransposon | 37 | F-box protein |
12 | RNAseH containing reverse transcriptase | 38 | TCP transcription factor |
13 | F-box protein | 39 | Unknown protein |
14 | RNA dependent RNA polymerase | 40 | Retrotransposon |
14/1 | Transposon fragment | 41 | Unknown protein |
15 | Hypothetical protein (Pseudogene) | 42 | Origin recognition complex subunit 6 |
16 | RNA dependent RNA polymerase | 43 | Sterol desaturase/Acid phosphatase |
17 | CAAX amino terminal protease | 44 | Disease resistance protein (R1) |
18 | Methyltransferase | 45 | Disease resistance protein (R1_1, 82% identity to R1) |
19 | Phytochrome kinase substrate | 46 | Disease resistance protein (R1_2, 49.3% identity to R1) |
19/1 | Retrotransposon | 47 | HVA22-like protein |
20 | AAA ATPase | 48 | Regulator of chromosome condensation, RCC1 |
21 | Retrotransposon(Pseudogene) | 49 | Retrotransposon |
22 | Disease resistance protein (R1-3, 74.7% identity to R1) | 50 | Hypothetical protein (Pseudogene) |
22/1 | Disease resistance protein (R1-6, 83.5% identity to R1) | 51 | Transposon-like |
23 | Disease resistance protein (R1_4, 80.2% identity to R1) | 52 | Disease resistance protein (R1_7, 80.7% identity to R1) |
24 | Disease resistance protein (R1_5, 85.9% to R1) | 53 | Retrotransposon |
25 | Retrotransposon | 54 | Disease resistance protein (R1_8, 83.2% identity to R1) |
26 | F-box protein-like | Â | Â |