Housekeeping and tissue-specific genes in mouse tissues

Kouadjo, Kouame E; Nishida, Yuichiro; Cadrin-Girard, Jean F; Yoshioka, Mayumi; St-Amand, Jonny

doi:10.1186/1471-2164-8-127

BMC Genomics

Table 3 Specific genes expressed in the female sexual organs

From: Housekeeping and tissue-specific genes in mouse tissues

																Tissues from GEO and accession number
Tag	Testis	Prostate	Ovary	Mammary gland	Uterus	Vagina	Skin	Liver	Adipose tissue	Lung	Bone	Skeletal muscle	Cerebral cortex	Hypothalamus	Pituitary gland	Mouse embryonic fibroblasts GSM7759	Heart normal GSM106587	Thymus normal GSM106596	Bladder normal GSM106599	Kidney normal GSM56242	Spleen normal GSM106591	Pancreas Normal GSM106592	Intestine UniGene and EST expression (%)	Description [UniGene cluster, GenBank Accession No]	General function
Ovary
TGGCAGAAGCC	0^a	0^a	73	0^a	0^a	0^a	0^a	0^a	0^a	0^a	0^a	0^a	0^a	0^a	0^a	0^a	0^a	0^a	0^a	0^a	0^a	0^a	0	RIKEN cDNA 4930583H14 gene [Mm.273339, NM_026358]	Protein secretion
GTCAACACAGG	2^a	0^a	38	0^a	1^a	0^a	0^a	0^a	0^a	0^a	0^a	0^a	0^a	0^a	0^a	0^a	0^a	0^a	0^a	0^a	0^a	0^a		NM	Novel transcript
CATATGTTGAT	2^a	0^a	36	0^a	0^a	0^a	0^a	0^a	0^a	0^a	0^a	0^a	0^a	1^a	0^a	0^a	0^a	0^a	0^a	0^a	0^a	0^a	0	RIKEN cDNA 4921521F21 gene [Mm.18725, NM_027582]	catalyzes the reduction of 2,5-diketo-d-gluconic acid
Mammary gland
TCCGGAGAAAA	0^a	1^a	0^a	35	0^a	0^a	1^a	0^a	1^a	0^a	0^a	0^a	0^a	0^a	0^a	0^a	0^a	0^a	0^a	0^a	0^a	0^a		NM	Novel transcript
CTAGGTGGTGC	0^a	0^a	0^a	32	1^a	0^a	0^a	1^a	0^a	0^a	0^a	0^a	0^a	0^a	0^a	0^a	0^a	0^a	0^a	0^a	0^a	0^a	0	glycosylation dependent cell adhesion molecule 1 [Mm.219621, NM_008134]	Cell signaling
Uterus
TCTGACGATGT	0^a	0^a	0^a	0^a	130	0^a	0^a	0^a	0^a	0^a	0^a	0^a	0^a	0^a	0^a	0^a	0^a	0^a	0^a	0^a	0^a	1^a	73	proline-rich acidic protein 1 [Mm.141646, NM_009475]	Cell signaling
GAAGCTGTATG	0^a	0^a	2^a	0^a	33	0^a	0^a	0^a	0^a	0^a	0^a	0^a	0^a	0^a	0^a	0^a	1^a	0^a	0^a	2^a	0^a	0^a	25	Hydroxysteroid 11-beta dehydrogenase 2 [Mm.5079, BC014753]	Steroid hormone synthesis
TACATAGATGG	0^a	1^a	0^a	0^a	31	0^a	1^a	1^a	0^a	0^a	0^a	0^a	0^a	0^a	0^a	0^a	0^a	0^a	0^a	0^a	0^a	0^a	85	chloride channel calcium activated 3 [Mm.33483, NM_017474]	Cell signaling
Vagina
CTGTATTTGGG	0^a	0^a	0^a	0^a	2^a	114	0^a	0^a	0^a	0^a	0^a	0^a	0^a	0^a	0^a	0^a	0^a	0^a	0^a	0^a	0^a	0^a		NM	Novel transcript
AAGCACCAAAT	0^a	0^a	0^a	0^a	2^a	85	0^a	0^a	0^a	0^a	0^a	0^a	0^a	0^a	0^a	0^a	0^a	0^a	0^a	0^a	0^a	0^a		NM	Novel transcript
AAAGCATCCTT	0^a	0^a	0^a	0^a	1^a	77	0^a	0^a	0^a	0^a	0^a	0^a	0^a	0^a	0^a	0^a	0^a	0^a	0^a	0^a	0^a	0^a	0	keratin intermediate filament 16a [Mm.343031, XM_484082]	Cell structure
CAGAACCTCAA	0^a	0^a	0^a	0^a	1^a	39	0^a	0^a	0^a	0^a	0^a	0^a	0^a	1^a	0^a	0^a	0^a	0^a	0^a	0^a	0^a	0^a	26	keratin complex 1, acidic, gene 13 [Mm.4646, BY709670]	Cell structure
GCCTTGGAGGT	0^a	0^a	0^a	0^a	2^a	35	0^a	0^a	0^a	0^a	0^a	0^a	0^a	0^a	0^a	0^a	0^a	0^a	0^a	0^a	0^a	0^a	0	keratin complex 2, basic, gene 6 g [Mm.22657, NM_010669]	Cell structure
GGGACTCCTCC	0^a	0^a	0^a	0^a	0^a	34	1^a	1^a	0^a	0^a	0^a	0^a	0^a	0^a	0^a	0^a	0^a	0^a	0^a	0^a	0^a	9^a	84	retinol binding protein 2, cellular [Mm.12825, NM_009034]	Intracellular transport

^a Significant difference vs. no. of tags show n in bold (p < 0,05)

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