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Table 1 Characterization of sequences with in-silico verified termini

From: ConiferEST: an integrated bioinformatics system for data reprocessing and mining of conifer expressed sequence tags (ESTs)

   Only One Terminus2 Only Two Termini At Least One Terminus
  Num1 5TSS 3TSS 5TNS 3TNS 5TSS+3TSS 5TNS+3TNS 5TSS+3TNS 5TNS+3TSS 5TSS 3TSS 5TNS 3TNS
3' reads 83,021 (48.2%) 730 (0.88%) 80 (0.10%) 21,901 (26.38%) 6,574 (7.92%) 2 (0.00%) 2,306 (2.78%) 1,654 (1.99%) 7 (0.01%) 4,473 (5.39%) 161 (0.19%) 24,929 (30.03%) 12,642 (15.2%)
5' reads 89,208 (51.8%) 3,078 (3.45%) 2,632 (2.95%) 346 (0.39%) 614 (0.69%) 120 (0.13%) 3 (0.00%) 1,238 (1.39%) 14 (0.02%) 4,760 (5.34%) 2,815 (3.16%) 393 (0.44%) 2,172 (2.43%)
Total 172,229 (100%) 3,808 (2.21%) 2,712 (1.57%) 22,247 (12.92%) 7,188 (4.17%) 122 (0.07%) 2,309 (1.34%) 2,892 (1.68%) 21 (0.01%) 9,233 (5.36%) 2,976 (1.73%) 25,322 (14.70%) 14,814 (8.60%)
  1. 1. Num stands for the number of sequence reads and percentage (in parentheses) of either the 3'-, or 5'-reads to the total number of reads.
  2. 2. 5TSS = 5' terminus in the sense strand, 3TSS = 3' terminus in the sense strand, 5TNS = 5' terminus in the non-sense strand and 3TNS = 3' terminus in the non-sense strand.
  3. All these data are retrievable through ConiferEST web interfaces (see Figure 3C, for example).