From: Tissue-specific mRNA expression profiling in grape berry tissues
Functional category | % Unigenes over expressed in pulp: | % Unigenes over expressed in skin: | % Unigenes over expressed in seed: | % total in probesets | |||
---|---|---|---|---|---|---|---|
a) Top level | Well-watered | Water-deficit | Well-watered | Water-deficit | Well-watered | Water-deficit | Â |
Protein with binding function | 19.8 (23) | 11.0 (12) | 10.2 (13) | 11.9 (18) | 17.5 (7) | 10.3 (3) | 29.5 (5994) |
Metabolism | 37.9 (44) | 28.4 (31) | 23.4 (30) | 41.7 (63) | 42.5 (17) | 6.9 (2) | 20.9 (2851) |
Protein fate | 8.6 (10) | 6.4 (7) | 8.6 (11) | 5.3 (8) | 15 (6) | 0 (0) | 16.7 (2270) |
Signal transduction mechanism | 12.9 (15) | 9.2 (10) | 8.6 (11) | 9.9 (15) | 10 (4) | 6.9 (2) | 13.6 (1847) |
Transcription | 7.8 (9) | 10.1 (11) | 11.7 (15) | 7.3 (11) | 5 (2) | 6.9 (2) | 12.9 (1762) |
Cell rescue, defense and virulence | 21.5 (25) | 18.3 (20) | 11.7 (15) | 18.5 (28) | 22.5 (9) | 10.3 (3) | 11.1 (1509) |
Development | 12.9 (15) | 7.3 (8) | 10.9 (14) | 3.3 (5) | 12.5 (5) | 3.4 (1) | 11.8 (1611) |
Cell fate | 6.0 (7) | 5.5 (6) | 5.5 (7) | 4.6 (7) | 5 (2) | 0 (0) | 11.7 (1593) |
Control of cellular organization | 6.9 (8) | 6.4 (7) | 9.4 (12) | 10.6 (16) | 10 (4) | 10.3 (3) | 9.5 (1296) |
Interaction with cellular environment | 12.1 (14) | 3.7 (4) | 14.1 (18) | 4.6 (7) | 10 (4) | 6.9 (2) | 8.5 (1158) |
Cell cycle and DNA processing | 3.4 (4) | 1.8 (2) | 1.6 (2) | 3.3 (5) | 0 (0) | 0 (0) | 8.4 (1145) |
Transport facilitation | 19.8 (23) | 8.3 (9) | 13.3 (17) | 7.9 (12) | 12.5 (5) | 3.4 (1) | 8.6 (1174) |
Cellular transport | 8.6 (10) | 1.8 (2) | 4.7 (6) | 4.0 (6) | 0 (0) | 0 (0) | 7.2 (982) |
Protein synthesis | 1.7 (2) | 2.7 (3) | 2.3 (3) | 4.0 (6) | 10 (4) | 0 (0) | 7.5 (1017) |
Energy | 14.7 (17) | 9.2 (10) | 10.2 (13) | 10.6 (16) | 22.5 (9) | 0 (0) | 7.0 (947) |
Interaction with environment | 12.1 (14) | 9.2 (10) | 7.8 (10) | 9.9 (15) | 5 (2) | 0 (0) | 7.0 (956) |
Protein activity regulation | 1.7 (2) | 0 (0) | 3.1 (4) | 0.7 (1) | 2.5 (1) | 0 (0) | 3.5 (478) |
Cell type differentiation | 1.7 (2) | 0 (0) | 2.3(3) | 0 (0) | 0 (0) | 0 (0) | 1.9 (257) |
Storage protein | 0 (0) | 0.9 (1) | 0 (0) | 0 (0) | 0 (0) | 6.9 (2) | 0.3 (45) |
Unknown function | 13.8 (16) | 5.5 (6) | 14.8 (19) | 13.9 (21) | 2.5 (1) | 10.3 (3) | 9.6 (1306) |
No hit | 14.7 (17) | 38.5 (42) | 22.7 (29) | 23.2 (35) | 30 (12) | 58.6 (17) | 34.2 (4656) |
b) Metabolism | Â | Â | Â | Â | Â | Â | Â |
Carbohydrates | 19.8 (23) | 11.9 (13) | 13.3 (17) | 17.9 (27) | 17.5 (7) | 6.9 (2) | 8.6 (1169) |
Secondary metabolism | 13.8 (16) | 12.8 (14) | 9.4 (12) | 22.5 (34) | 15 (6) | 0 (0) | 4.8 (652) |
Lipids | 10.3 (12) | 7.3 (8) | 3.9 (5) | 6.0 (9) | 10 (4) | 0 (0) | 4.6 (632) |
Amino acids | 6.9 (8) | 3.7 (4) | 5.5 (7) | 7.3 (11) | 7.5 (3) | 0 (0) | 3.8 (511) |
Vitamins and cofactors | 5.2 (6) | 2.7 (3) | 2.3 (3) | 4.6 (7) | 5 (2) | 0 (0) | 2.4 (326) |
Phosphate | 0.9 (1) | 1.8 (2) | 0 (0) | 0 (0) | 2.5 (1) | 0 (0) | 3.2 (433) |
Nucleotides | 4.3 (3) | 2.7 (3) | 3.9 (3) | 3.3 (4) | 7.5 (3) | 0 (0) | 2.9 (401) |
Nitrogen and sulfur | 4.6 (5) | 2.6 (3) | 3.3 (5) | 3.9 (5) | 7.5 (3) | 0 (0) | 1.4 (184) |