Table 5 Biological processes with significant genes over-represented after short- and long-term N availability increase

transport

1398

7.7

11

20.4

0.002

cell homeostasis

64

0.4

3

5.6

0.0009

nitrate assimilation

7

0.04

2

3.7

0.0002

sulfate assimilation

11

0.06

2

3.7

0.0005

response to carbohydrate stimulus

29

0.16

2

3.7

0.003

primary metabolism

5170

28.5

203

54.7

1.0E-26

protein biosynthesis

500

2.8

121

32.6

4.2E-98

organelle organization and biogenesis

439

2.4

45

12.1

3.5E-19

ribosome biogenesis and assembly

117

0.6

34

9.2

5.9E-30

translation

136

0.7

13

3.5

4.4E-06

response to auxin stimulus

191

1.1

12

3.2

0.0006

nucleosome assembly

56

0.3

9

2.4

1.8E-06

DNA packaging

106

0.6

9

2.4

0.0003

translational elongation

31

0.2

8

2.2

1.5E-07

nitrogen compound metabolism

124

0.7

8

2.2

0.004

amino acid biosynthesis

99

0.5

7

1.9

0.004

ribonucleotide biosynthesis

45

0.2

5

1.3

0.002

chlorophyll biosynthesis

14

0.08

4

1.1

0.0001

response to cytokinin stimulus

31

0.2

3

5.6

0.0001

4

1.1

0.003

response to abiotic stimulus

1091

6.0

40

15.5

3.2E-08

secondary metabolism

249

1.4

14

5.4

1.4E-05

response to abscisic acid stimulus

113

0.6

11

4.3

6.3E-07

phenylpropanoid biosynthesis

79

0.4

7

2.7

0.0001

flavonoid biosynthesis

30

0.2

5

1.9

6.0E-05

anthocyanin biosynthesis

8

0.04

1

10

0.004

3

1.2

0.0002

starch biosynthesis

7

0.04

2

0.8

0.004