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Table 2 Reversible gene expression upon smoking cessation related to xenobiotic metabolism and DNA adduct formation (genes in bold have not been previously associated with smoking)

From: Effect of active smoking on the human bronchial epithelium transcriptome

Tag

Gene Symbol

Gene Name

CS Mean*

FS Mean*

NS Mean*

P-Value (CVsF)

GGCCCAGGCC

ALDH3A1

Aldehyde dehydrogenase 3 family, memberA1

4355

313

261

0.00002

TTAAAAATTC

ADH7

Alcohol dehydrogenase 7 (class IV)

899

145

130

0.00002

AGGTCTGCCA***

AKR1C2

Aldo-keto reductase family 1, member C2

547

116

74

0.00002

AATGCTTTTA

CYP1B1

Cytochrome P450, family 1, subfamily B, polypeptide 1

204

13

0

0.00002

TTGGAATCCA

STAU2

Staufen, RNA binding protein, homolog 2 (Drosophila)

67

17

23

0.00002

TTATCAAATC

NQO1

NAD(P)H dehydrogenase, quinone 1

809

202

149

0.00003

CAAATAAACC

PIR

Pirin (iron-binding nuclear protein)

260

47

43

0.00003

GGCCCCATTT

CBR1

Carbonyl reductase 1

144

31

24

0.00003

TATTTTTGTT

TXNRD1

Thioredoxin reductase 1

250

88

78

0.00006

GGTGGTGTCT

GPX2

Glutathione peroxidase 2 (gastrointestinal)

384

40

46

0.00011

TATTTTTGAA

DRB1

Developmentally regulated RNA-binding protein 1

204

32

22

0.00011

TGGGAGTGGG**

NMNAT2

Nicotinamide nucleotide adenylyltransferase 2

175

17

9

0.00011

CAAGACCAGT

GSTA2

Glutathione S-transferase A2

1436

485

528

0.00019

GCTTGAATAA

AKR1B10

Aldo-keto reductase family 1, member B10 (aldose reductase)

332

10

15

0.0003

GTGCAGGGAG

SPDEF

SAM pointed domain containing ets transcription factor

239

64

50

0.0003

GGAGGCTTCC

MECR

Mitochondrial trans-2-enoyl-CoA reductase

85

26

22

0.0003

GTGATGTAAG

SRXN1

Sulfiredoxin 1 homolog (S. cerevisiae)

63

14

11

0.0003

TATGCTTTAA

NT5DC1

5'-nucleotidase domain containing 1

59

23

24

0.0003

GAACGCCTAA

DPYSL2

Dihydropyrimidinase-like 2

1

21

23

0.0004

TTTTCTGAAA

TXN

Thioredoxin

698

326

212

0.00048

CTTGCATAAG

CYP1A1

Cytochrome P450, family 1, subfamily A, polypeptide 1

89

2

0

0.00048

GCAAGAAGAG

ALDH3A1

Aldehyde dehydrogenase 3 family, memberA1

77

10

2

0.00048

AGAACAAAAC

PRDX1

Peroxiredoxin 1

1043

418

510

0.00071

AAATATTTAA

SLC35A3

Solute carrier family 35, member A3

47

14

19

0.00071

CGGCTGAATT

PGD

Phosphogluconate dehydrogenase

252

104

80

0.00106

CTTATCAGTA

BTBD7

BTB (POZ) domain containing 7

94

22

2

0.00106

AAGAGTTTTG

AKR1B1

Aldo-keto reductase family 1, member B1 (aldose reductase)

25

5

6

0.00141

GCTGAGATGA**

CYP4F11

Cytochrome P450, family 4, subfamily F, polypeptide 11

22

6

2

0.00141

GGCGCCTCCT

TALDO1

Transaldolase 1

232

76

94

0.00152

GACACAGCAA

ENTPD8

Ectonucleoside triphosphate diphosphohydrolase 8

24

3

2

0.00159

CAGTCTAAAA

UCHL1

Ubiquitin carboxyl-terminal esterase L1 (ubiquitin thiolesterase)

92

4

0

0.00197

ACATCCTAGG

ALDH1A1

Aldehyde dehydrogenase 1 family, member A1

60

28

30

0.00216

TTAGAAGGAA

NQO1

NAD(P)H dehydrogenase, quinone 1

41

14

9

0.00216

AGGTCTACCA

AKR1C2

Aldo-keto reductase family 1, member C2

270

32

8

0.00292

ATTAGGCCTG

TXNRD1

Thioredoxin reductase 1

51

19

17

0.00297

GAGAGCTTTG

AKR1C3

Aldo-keto reductase family 1, member C3

149

21

22

0.00298

TACGCTTGGT

CYB5R1

Cytochrome b5 reductase 1

68

32

30

0.00298

CACTGCCTTG

FTH1

Ferritin, heavy polypeptide 1

59

23

17

0.00298

CTGCTGCACT

GSR

Glutathione reductase

126

54

50

0.0041

GGCAAAATTA

SLC35A3

Solute carrier family 35, member A3

73

32

35

0.0041

ACCTTGGGGT

NQO1

NAD(P)H dehydrogenase, quinone 1

73

19

6

0.0041

AATGTTCAGG

COQ6

Coenzyme Q6 homolog, monooxygenase (yeast)

29

12

4

0.00708

CACTGACCAG

NOD27

Nucleotide-binding oligomerization domains 27

31

10

0

0.00927

CTCGGAGGCC

SEPX1

Selenoprotein X, 1

71

32

28

0.00956

CTCCAAAAAA

CPSF2

Cleavage and polyadenylation specific factor 2, 100 kDa

118

44

14

0.02013

AATGGAAACT

GCLM

Glutamate-cysteine ligase, modifier subunit

34

16

9

0.03186

  1. * Mean in tags per million (TPM)
  2. ** Changed mapping with TAGMapper [56]
  3. ***Tag maps with equal reliability to AKR1C1