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Table 6 Single nucleotide polymorphisms (SNPs) statistics*

From: MELOGEN: an EST database for melon functional genomics

Variation

 

Number

%

pSNP transversions:

 

127

35.7

pSNP transitions:

 

229

64.3

pSCH transversions:

 

4,273

30.4

pSCH transitions:

 

9,801

69.6

Mutation

Number of pSNP

Mutation

Number of pSCH

A<->C

28

A<->C

859

A<->G

117

A<->G

5,860

A<->T

37

A<->T

1,897

C<->G

29

C<->G

431

C<->T

112

C<->T

3,941

G<->T

33

G<->T

1,086

  1. *Type and number of transition and transversions are shown for putative single nucleotide variations in sequence (pSCH) and for putative high-quality single nucleotide polymorphism (pSNP) identified in the melon database.
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BMC Genomics

ISSN: 1471-2164

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