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Table 9 Transcripts selected from the database for gene expression analysis by Real Time qPCR

From: MELOGEN: an EST database for melon functional genomics

Gene

Melogen unigene

Sequence length (bp)

Arabidopsis locus

Aminoacid similarity (%)

Annotation (HMMR domain)

CTL1

bCL1465Contig1

1,387

AT1G05850

66.8

Chitinase-like protein 1, similar to class I chitinase (Glyco_hydro_19)

CYP 7

bCL3337Contig1

801

AT5G58710

78.4

Peptidyl-prolyl cis-trans isomerase, cyclophilin

EIF4A-2

bCL2906Contig1

1,146

AT1G54270

92.6

Eukaryotic translation initiation factor 4A-2 (DEAD)

EIF4E

bCL4710Contig1

815

AT4G18040

77.5

Eukaryotic translation initiation factor 4E 1 (IF4E)

EIN4

bCL1742Contig1

829

AT3G04580

55.7

Ethylene receptor (Response_reg)

GA2OX1

bCL1313Contig1

1,454

AT1G78440

59.9

Gibberellin 2-oxidase (2OG-FeII_Oxy)

HSP101

bCI_38-F11-M13R_c

726

AT1G74310

73.4

Heat shock protein 101 (AAA_2)

HSP70

bPSI_41-D06-M13R_c

819

AT5G09590

86.8

Heat shock protein 70/HSC70-5 (HSP70)

IAA9

bCL1341Contig1

1,672

AT5G65670

51.2

Auxin-responsive protein/indoleacetic acid- induced protein 9 (AUX_IAA)

LSM1

bHS_37-F11-M13R_c

766

AT3G14080

72.4

Small nuclear ribonucleoprotein/snRNP, putative/Sm protein, putative, similar to U6 snRNA-associated Sm-like protein

LUT2

bCL3563Contig1

1,082

AT5G57030

75.5

Lycopene epsilon cyclase (Lycopene_cycl)

NCBP

bCL183Contig1

1,081

AT5G18110

85.3

Novel cap-binding protein (IF4E)

SVP

bCL2852Contig1

826

AT2G22540

54.9

Short vegetative phase protein, MADS box transcription factor related cluster (SRF-TF)

HIR

bCL144Contig1

1,266

AT1G69840

89.7

Band 7 family protein, strong similarity to hypersensitive-induced response protein (Band_7)

TCH4

bCL1212Contig1

1,228

AT5G57560

65.9

Xyloglucan:xyloglucosyl transferase/xyloglucan endotransglycosylase/endo- xyloglucan transferase/TCH4

TIP4

bA_23-B12-M13R_c

751

AT2G25810

50.5

Tonoplast intrinsic protein (MIP)

TOM1

bCL4416Contig1

780

AT4G21790

75.4

Transmembrane protein-related/TOM1 (DUF1084)

TOM2A

bCL3115Contig1

1,113

AT1G32400

60.1

Senescence-associated family protein

TOM3

bPSI_36-E03-M13R_c

857

AT1G14530

 

Tobamovirus multiplication protein 3/THH1 (DUF1084)

UGE5

bCL1153Contig1

1,313

AT4G10960

70.9

UDP-glucose 4-epimerase/UDP-galactose 4- epimerase/Galactowaldenase (Epimerase)

WRKY70

bA_25-B01-M13R_c

889

AT3G56400

42.1

WRKY family transcription factor, DNA-binding protein (WRKY)