Table 4 Effect of vectors on vector trimming performance by three programs
From: An optimized procedure greatly improves EST vector contamination removal
Vector | #EST tested | Trimming Programs | |||||||
|---|---|---|---|---|---|---|---|---|---|
| Â | Â | SeqClean | Cross_match | LUCY2 | LUCY2(qul) | ||||
| Â | Â | CVS | RVS | CVS | RVS | CVS | RVS | CVS | RVS |
PCMV. SPORT-6.1 | 3000 | 0.03% | 0.03% | 3.17% | 3.17% | 0.30% | 0.27% | 0.17% | 0.17% |
PT7T3PAC | 3000 | 0.00% | 0.00% | 0.23% | 0.77% | 0.10% | 0.07% | 0.03% | 0.03% |
PDNR-LIB | 3000 | 0.30% | 0.30% | 1.17% | 1.17% | 0.00% | 0.00% | 0.03% | 0.03% |
pGEM-Teasy | 2882 | 38.38% | 0.03% | 6.45% | 7.15% | 0.52% | 0.52% | 0.31% | 0.31% |
pTriplEx2 | 2318 | 0.04% | 0.04% | 9.66% | 9.66% | 4.66% | 4.87% | 5.31% | 5.52% |
pCR21TOPO | 5 | 0.00% | 0.00% | 0.00% | 0.00% | 0.00% | 0.00% | 0.00% | 0.00% |
pZL1 | 700 | 1.43% | 0.00% | 3.86% | 3.86% | 2.71% | 2.71% | 2.29% | 2.29% |
pT7Blue | 130 | 0.77% | 0.00% | 9.23% | 9.23% | 0.77% | 25.38% | 0.77% | 25.38% |
Total | 15035 | 7.50% | 0.08% | 3.90% | 4.14% | 1.03% | 1.26% | 1.04% | 1.28% |