Parameter | Overall | (coding/non-coding) |
---|---|---|
Number of fragments | 230 | Â |
Average sample size1 | 10.0 | Â |
Average fragment size, kb | 0.437 | Â |
Total size of amplicons, kb | 100.5 | 81.4/19.1 |
Total bases sequenced, kb2 | ~2010 | Â |
Number of SNPs | 1573 | 1170/403 |
Frequency of SNP | 1 per 64 bp | 1 per 69 bp/1 per 47 bp |
Number of indels | 52 | 9/43 |
Frequency of indels | 1 per 1932 bp | 1 per 9055 bp/1 per 444 bp |
Mean nucleotide diversity (π/θ) | 0.0051/0.0046 |  |
Maximum nucleotide diversity (π/θ) | 0.0246/0.0173 |  |
Minimum nucleotide diversity (π/θ) | 0.0004/0.004 |  |
Mean gene diversity | 0.30 | 0.30/0.30 |
Mean haplotype diversity | 0.64 | Â |
Mean Tajima D | 0.29 | Â |
Mean observed haplotypes | 6.6 | Â |
Mean expected haplotypes | 5.8 | Â |