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Table 1 Chromosome localization, nucleotide position, allele variations, average heterozygosity and Fst values of the selected markers. Minor allele frequency (MAF) of HapMap data are reported in the brackets.

From: In silico and in vitro comparative analysis to select, validate and test SNPs for human identification

     

European Population

African Population

Asian Population

 

SNPs

Chr

Nucleotide position

Variation

Hap map Heterozygosity

Minor all. frequency

Minor all. frequency

Minor all. frequency

Fst

rs1779866

1

61,194,420

C/G

0.497

0.43 (0.44)

0.47 (0.50)

0.45 (0.50)

0.0126

rs1922807

2

77,574,919

A/G

0.493

0.46 (0.50)

0.37 (0.40)

0.38 (0.46)

0.0318

rs2278741

2

121,465,927

C/G

0.470

0.27 (0.31)

0.37 (0.40)

0.40 (0.53)

0.1430

rs2962594

5

2,759,621

A/G

0.477

0.38 (037)

0.44 (0.43)

0.45 (0.37)

0.0333

rs905213

5

91,995,945

C/T

0.463

0.38 (0.61)

0.35 (0.35)

0.41 (0.36)

0.0000

rs11242909

6

422,065

C/T

0.536

0.33 (0.30)

0.38 (0.50)

0.39 (0.50)

0.0000

rs3130315

6

32,328,663

A/G

0.467

0.38 (0.38)

0.37 (0.67)

0.46 (0.50)

0.0634

rs7740233

6

150,965,880

C/T

0.477

0.43 (0.44)

0.45 (0.42)

0.44 (0.51)

0.0136

rs10866988

8

5,235,745

C/G

0.500

0.47 (0.46)

0.49 (0.50)

0.40 (0.43)

0.0127

rs1506981

11

6,735,647

A/G

0.487

0.55 (0.53)

0.33 (0.37)

0.34 (0.44)

0.0146

rs1533800

11

33,781,074

A/C

0.487

0.22 (0.49)

0.42 (0.45)

0.41 (0.42)

0.1278

rs1981752

12

16,430,035

C/T

0.487

0.33 (0.36)

0.44 (0.48)

0.49 (0.52)

0.0955

rs478347

12

128,915,904

G/T

0.510

0.49 (0.48)

0.46 (0.45)

0.42 (0.35)

0.0032

rs9562080

13

113,941,879

C/G

0.483

0.50 (0.39)

0.44 (0.45)

0.47 (0.61)

0.0034

rs8033863

15

99,857,192

C/G

0.407

0.37 (0.38)

0.36 (0.43)

0.40 (0.39)

0.0000

rs886528

16

3,751,557

C/T

0.500

0.38 (0.52)

0.40 (0.47)

0.45 (0.43)

0.0450

rs154659

16

88,194,838

C/T

0.467

0.16 (0.29)

0.49 (0.46)

0.34 (0.42)

0.1229

rs2317225

17

2,593,098

A/G

0.490

0.37 (0.38)

0.45 (0.52)

0.39 (0.48)

0.0029

rs11881170

19

62,864,113

A/C

0.497

0.39 (0.44)

0.41 (0.42)

0.35 (0.30)

0.0000

rs380011

21

14,542,669

C/T

0.487

0.39 (0.36)

0.48 (0.48)

0.45 (0.50)

0.0133

rs2267628

X

137,456,866

A/G

-

0.49 (0.46)

0.03 (0.02)

0.21 (0.12)

-

rs4116821

Y

20,531,728

C/G

-

0.37 (0.46)

0.01 (0.19)

0.35 (0.00)

-

rs1421177

Y

18,027,988

G/A

-

0.00

0.00

0.00

-

rs2032652

Y

20,305,438

C/T

-

0.13 (0.00)

0.00 (0.00)

0.46 (0.46)

-