Skip to main content
Figure 2 | BMC Genomics

Figure 2

From: Positional bias of general and tissue-specific regulatory motifs in mouse gene promoters

Figure 2

Integrated representation of motifs with significant positional bias in mouse promoters. The results were obtained by the program PEAKS, using different motif libaries. A. TRANSFAC PSWMs. B. JASPAR CORE PSWMs. C. JASPAR phyloFACTS. D. oligomers of size 6 (6mers). Motifs that belong to the same motif cluster are shown with the same color. A region from -200 to +100 with respect to the TSS is shown. The width of the ovals is the significant region of each motif (p-value <= 10-5). The height of the ovals, the relative motif signal (RMS), is the number of sequences that contain a motif located at the position with the maximum score divided by the minimum number of sequences containing that motif that would be required to pass the p-value cut-off.

Back to article page