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Table 1 Non-conserved miRNAs and miRNA candidates identified in Populus.

From: Conservation and divergence of microRNAs in Populus

Families

Loci

Chrom.

Sequences

Arm

Len

VB

L

miRNA*

ptr-miR7000

1

scaffold_9486

AUACCCGGCCGUCGGGGCAA

3'

20

3

0

yes

ptr-miR7001

1

LG_II

UUACCAAUACCUCUCAUGCCAA

3'

22

0

24

no

ptr-miR7002*

1

LG_VIII

UCUUUCCAACGCCUCCCAUACC

3'

22

40

73

no

ptr-miR7003

1

scaffold_163

UUCAAUGGCUCGGUCAGGUUA

3'

21

77

154

no

ptr-miR7004

1

scaffold_148

UCGUAAUGCUUCAUUCUCACAA

5'

22

39

110

no

ptr-miR7005

1

LG_VIII

UCCACAUUCGGUCAAUGUUCC

3'

21

63

50

no

ptr-miR7006*

1

LG_VIII

AGAUGGGAGAGUAUGCAAGAAG

5'

22

0

2

yes

ptr-miR7007

1

LG_XII

UUCAUUCCUCUUCCUAAAAUGG

5'

22

48

120

no

ptr-miR7008

1

scaffold_219

UCGCAAGUUGGAGGCCUGGCC

5'

21

21

0

no

ptr-miR7009-1#

5

LG_XII

UUCUGAACUCUCUCCCUCAAC

5'

21

0

2

no

ptr-miR7009-2#

5

LG_XII

UUCUGAACUCUCUCCCUCAAC

5'

21

0

2

no

ptr-miR7009-3#

5

LG_XII

UUCUGAACUCUCUCCCUCAAC

5'

21

0

2

no

ptr-miR7009-4#

5

LG_XV

UUCUGAACUCUCUCCCUCAAC

5'

21

0

2

no

ptr-miR7010#

1

LG_XV

UAAUCUCCACCAUCUCAGCUU

 

21

2

0

no

ptr-miR7011

1

scaffold_163

CACAAGCAAUCUAGUUGGCUC

3'

21

0

5

no

ptr-miR7012#

1

scaffold_196

AACGACUCUCGGCAACGGA

5'

19

0

2

no

Ptr-miR7013*

1

Scaffold _129

AUUCCUCUUCCUAAAAUGG

5'

19

1

1

no

ptr-miR7014#

1

LG_VIII

CUCCACAUUCGGUCAAUGUUC

3'

21

2

0

no

ptr-miR7015

1

LG_XIII

UUCCCAACUCCACCCAUCCCAU

3'

22

0

3

no

ptr-miR7016

1

scaffold_228

CCGAUUGAAUGGUCCGGUGAA

5'

21

3

5

no

ptr-miR7017

1

Scafold_131

UUUUGGUAAUGCAAGUGUUGC

3'

21

0

5

no

ptr-miR7018

1

LG_IX

UGCAUUUGCACCUGCACCUUA

5'

21

4

0

no

ptr-miR7019

1

LG_X

UGCCGACCCCACCCAUGCCAA

3'

21

37

2

no

ptr-miR7020

1

scaffold_853

GAAUGGUCCGGUGAAGUGUU

5'

20

3

0

yes

ptr-miR7021

1

LG_VIII

UCUUGCCUACUCCUCCCAUUCC

3'

22

7

10

yes

ptr-miR7022

1

scaffold_456

CGGGGUAUUGUAAGUGGCA

5'

19

3

0

yes

ptr-miR7023

1

LG_V

AAUCUCCACCAUCUCAGCUUC

3'

21

2

2

no

ptr-miR7024*

1

scaffold_1029

AUUCAGCCCCAUGUCGCUC

5'

19

2

0

no

ptr-miR7025

1

scaffold_20519

CAAUCCCCGACCUCGUGGC

3'

19

0

3

yes

ptr-miR7026#

2

LG_XIII

UCCGAUCAUUCCUCCCUCUCC

3'

21

1

1

no

ptr-miR7027#

2

Scafold_11788

UGCUGCCGAGGCCUGGCCUCC

3'

21

1

1

no

ptr-miR7028#

2

Scafold_20519

GGAGGCCAGGCCUCGGCAGCA

3'

21

1

1

no

ptr-miR7029-1*

3

LG_VII

UCUCGGACCAGGCUUCAUUCC

3'

21

32

35

no

ptr-miR7029-2*

3

LG_VIII

UCUCGGACCAGGCUUCAUUCC

3'

21

32

35

no

ptr-miR7029-3

3

LG_X

UCUCGGACCAGGCUUCAUUCC

3'

21

32

35

no

ptr-miR7030

2

LG_X

CACAUUCGGUCAACGUUCGAG

3'

21

10

8

no

ptr-miR7031-1#

4

LG_I

UGUUCAUGCUAAUUAAUUAGC

5'

21

0

2

no

ptr-miR7031-2#

4

LG_I

UGUUCAUGCUAAUUAAUUAGC

5'

21

0

2

no

ptr-miR7031-3#

4

LG_IX

UGUUCAUGCUAAUUAAUUAGC

5'

21

0

2

no

ptr-miR7031-4#

4

LG_X

UGUUCAUGCUAAUUAAUUAGC

5'

21

0

2

no

ptr-miR7032*

1

LG_X

UUGCCGACCCCACCCAUGCCAA

3'

22

37

66

no

ptr-miR7033-1*

4

LG_IV

UGGUUGUGGUUGCUUUUCAAA

3'

21

0

2

no

ptr-miR7033-2*

4

LG_IV

UGGUUGUGGUUGCUUUUCAAA

3'

21

0

2

no

ptr-miR7033-3*

4

LG_IV

UGGUUGUGGUUGCUUUUCAAA

5'

21

0

2

no

ptr-miR7033-4*

4

LG_VIII

UGGUUGUGGUUGCUUUUCAAA

3'

21

0

2

no

ptr-miR7034#

1

LG_XII

CGAGCCGAAUCAAUAUCACUC

3'

21

0

2

no

ptr-miR7035

1

LG_VIII

CUACUCCUCCCAUUCCAUCUGC

3'

22

0

4

no

ptr-miR7036

1

LG_XIV

CUCUCCCUCAAGGCUUCCAA

5'

20

3

5

no

ptr-miR7037

1

scaffold_196

UAAACGACUCUCGGCAACGGA

5'

21

4

5

no

ptr-miR7038#

1

LG_I

UGACCUUUCUUGGUGUUGUUAG

3'

22

2

0

no

ptr-miR7039

1

scaffold_163

UCAAUGGCUCGGUCAGGUUA

3'

20

3

7

no

ptr-miR7040-1#

2

LG_XIX

UUUGAUCGAUGAGGGAAUAAU

3'

21

2

0

no

ptr-miR7040-2#

2

LG_XIX

UUUGAUCGAUGAGGGAAUAAU

3'

21

2

0

no

ptr-miR7041#

1

LG_XIX

UUUGUGGAACUCGAACUGGU

5'

20

2

0

no

ptr-miR7042#

1

scaffold_163

CAGAUCAUGCCAUGACAGAAG

5'

21

2

0

no

ptr-miR7043#

1

scaffold_245

UUGGUUGCGCAUGAACCUGA

5'

20

2

0

no

ptr-miR7044

2

scaffold_163

UGACAGAAGAGUUAAAUGUUGA

5'

22

2

2

no

ptr-miR7045

2

LG_XVIII

UGCUCACUUCUCUUCUGUCAGC

3'

22

4

7

no

ptr-miR7046-1*

2

LG_VI

CCACAGCUUUCUUGAACUGCA

3'

21

2

1

no

ptr-miR7046-2*

2

LG_XVIII

CCACAGCUUUCUUGAACUGCA

3'

21

2

1

no

ptr-miR7047

1

LG_XIV

UUGACGAAAUGUGACGACUAC

3'

21

7

0

no

  1. The length (len) of each miRNA, the number of loci (loci), the number of times a sequence was sampled in leaf (L) and vegetative buds (VB), and whether or not a miRNA star (miRNA*) was observed are indicated. (*) indicate miRNAs for which the expression was confirmed by northern hybridization. (#) indicate miRNA candidates.